How a holobiome perspective could promote intensification, biosecurity and eco-efficiency in the shrimp aquaculture industry

Eric Daniel Gutiérrez Pérez RICARDO VAZQUEZ JUAREZ FRANCISCO JAVIER MAGALLON BARAJAS MIGUEL ANGEL MARTINEZ MERCADO GRISEL ALEJANDRA ESCOBAR ZEPEDA Paola Magallón Servín (2022, [Artículo])

"The aquaculture industry faces many challenges regarding the intensification of shrimp rearing systems. One of these challenges is the release of excessive amounts of nitrogen and phosphorus into coastal areas, causing disruption in nutrient cycling and microbial equilibrium, which are important for coastal productivity. Biosecurity within the shrimp rearing systems can also be compromised by disruption to the nutrient fluxes, and as consequence the microbiome of the system. In certain conditions, these changes could lead to the blooming of potentially pathogenic bacteria. These changes in the external microbiome of the system and the constant fluctuations of nutrients can affect the intestinal microbiome of shrimp, which is involved in the growth and development of the host, affecting nutrient absorption, regulating metabolic processes, synthesising vitamins, modulating the immune response and preventing growth of pathogenic bacteria. It has been suggested that specific changes in the intestinal microbiome of Litopenaeus vannamei may be an avenue through which to overcome some of the problems that this industry faces, in terms of health, growth and waste. Recent research, however, has focussed mainly on changes in the intestinal microbiome. Researchers have overlooked the relevance of other aspects of the system, such as the microbiome from the benthic biofilms; zooplankton, plankton and bacterioplankton; and other sources of microorganisms that can directly affect the microbial status of the intestinal and epiphytic communities, especially in rearing systems that are based on intensification and microbial maturation processes, such as a biofloc system. It is therefore necessary to place holobiome studies into context, including the ‘holobiome of the aquaculture system’ (microbiomes that make up the culture system and their interactions) and not only the intestinal microbiome. Thus, we describe factors that affect the shrimp microbiome, the methodology of study, from sampling to bioinformatic workflows, and introduce the concept of the ‘holobiome of the aquaculture system’ and how this enables us to promote the intensification, biosafety and eco-efficiency of shrimp farming. The holobiome perspective implies a greater investment of resources and time for research, but it will accelerate the development of technology that will benefit the development and sustainability of the aquaculture industry."

litopenaeus vannamei, microbiome, intensification, biofloc, holobiome of aquaculture systems CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS PRODUCCIÓN ANIMAL NUTRICIÓN NUTRICIÓN

Uso del cártamo (Carthamus tinctorius L.) como ingrediente en alimentos para juveniles del camarón Litopenaeus vannamei

ALFONSO GALICIA GONZALEZ (2009, [Tesis de doctorado])

Debido a los altos costos e incertidumbre en el abasto de la harina de pescado y pasta de soya, en los últimos años se han buscado alternativas que puedan sustituirlos sin tener un efecto negativo en el crecimiento de los camarones en el cultivo. En el presente trabajo se realizó un estudio para evaluar el valor nutricional del cártamo (Carthamus tinctorius) como fuente proteica en alimentos para juveniles de camarón blanco del Pacífico Litopenaeus vannamei. El primer capítulo comprende el estudio de la caracterización de tres productos de cártamo (HIC; Harina Integral de Cártamo, PCB; Pasta de cártamo baja en proteína y PCA; Pasta de cártamo alta en proteína) en base a su composición de nutrientes y algunos factores antinutricionales (hemaglutininas, saponinas, actividad uréasica, aflatoxinas e inhibidor de tripsina). Los productos de cártamo tuvieron un contenido de proteína entre 20.6 y 36.8%. La harina integral fue la que presentó el mayor nivel de extracto etéreo 31%, mientras que las pastas tuvieron un nivel bajo (1.8-1.0%). El contenido de fibra en el cártamo fue alto (17-23%). Los aminoácidos más abundantes en los productos de cártamo fueron el ácido aspártico y glutámico, en contraste los menos abundantes fueron lisina y metionina. Los ácidos grasos más abundantes fueron el ácido oleico, el linoleico, el palmítico y el estéarico. El contenido de calcio de los productos de cártamo varió de 0.25 a 0.42%, mientras que el contenido de fósforo varió del 0.23 a 0.25%. No se encontraron los factores antinutricionales buscados, a excepción del inhibidor de tripsina que tuvo valores bajos (7.56 UTI/mg de muestra). No se encontraron diferencias significativas en los coeficientes de utilización digestiva aparente (CUDA) de materia seca y carbohidratos de los productos de cártamo; sin embargo, sí se encontraron diferencias en los CUDA de proteína, lípidos (CUDAl) y de energía digestible (CUDAe). La actividad de las enzimas digestivas de camarones que fueron alimentados con productos de cártamo mostró un incremento en proteinasas generales y quimotripsina. La atractabilidad y el consumo de los alimentos con un 30% de inclusión de los productos de cártamo se vieron afectadas negativamente en los camarones [...]

In recent years, alternatives to fish and soybean meals in aquacultural feeds that do not have negative effects on growth of cultivated shrimp have been intensively studied in an effort to reduce the high costs and uncertainty in supplies. In this study, the nutritional value of safflower (Carthamus tinctorius) meal as a protein source in diets for juveniles Pacific whiteleg shrimp (Litopenaeus vannamei) was investigated. Initially, characterization of three safflower meals (i.e. WSM; whole safflower meal, LPSM; low-protein safflower meal and HPSM; high-protein safflower meal), focusing on chemical composition and antinutritional factors (hemaglutinine, saponine, ureasic activity, aflatoxin, and trypsin inhibitor) was conducted. Protein content ranged from 20.6 to 36.8%. Whole safflower meal contained the highest level of lipids (31%); lipids in the other safflower meals were as low as 1.0–1.8%. Fiber content was high (17–23%). The most abundant amino acids were aspartic and glutamic acids and lysine and methionine were less abundant. Oleic, linoleic, palmitic, and stearic fatty acids were present in greatest amounts. Calcium content ranged from 0.25–0.42% and phosphorus content ranged from 0.23–0.25%. Anti-nutritional factors were not found in the analyses, except for trypsin inhibitor, with values as low as 7.56 UTI mg–1 per sample. No significant differences between the apparent digestibility coefficients (ADC) for dry matter and carbohydrates in safflower meals were detected; however, protein ADC, lipid ADC, and energy ADC were different. Total proteinase and chymotrypsin increased significantly in diets where safflower meals were included. Atractability and consumption of feed with 30% safflower meals appeared to have negative effects on the juveniles [...]

atractabilidad; camarón; cártamo; Carthamus tinctorius; digestibilidad; enzimas digestivas; factores antinutricionales; Litopenaeus vannamei CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA ACUICULTURA MARINA OCEANOGRAFÍA ACUICULTURA MARINA

Gene expression in primary hemocyte culture of the Pacific white shrimp Penaeus vannamei infected with different white spot syndrome virus (WSSV) strains

Delia Patricia Parrilla Taylor REGINA ELIZONDO GONZALEZ Jesús Neftalí Gutiérrez Rivera SILVIA ALEJANDRA GARCIA GASCA NORBERTO VIBANCO PEREZ MA. DE JESUS DURAN AVELAR RICARDO VAZQUEZ JUAREZ (2022, [Artículo])

"Five previously analyzed white spot syndrome virus (WSSV) strains from northwest Mexico,differing in their genome architecture as well as in virulence, were selected (high virulence JP and LG strains;moderate virulence GVE and DIV strains; and low virulence LC10 strain) to evaluate pathogenesis response in vitro. Expression of phagocytosis-activating protein PAP, manganese superoxide dismutase MnSOD and peroxiredoxin PRX, and two genes of immediate-early expression (IE1 and WSSV304) were measured by qPCR in a primary hemocyte cell culture from Penaeus vannamei at 1, 3, 6, 12, and 24 h post-infection (hpi). PAP expression was significantly higher at 1 and 3 hpi, and JP and LC10 strains induced the highest expression. The response of MnSOD was high at 1 hpi, and a significant increase in PRX expression was detected at 3 hpi, probably due to the occurrence of an oxidative burst; expression levels of MnSOD and PRX were significantly higher at 1 and 3 hpi, respectively, induced by the LG strain (high virulence), suggesting an acute response. In general, expression of most immune-related - genes decreased after the initial hours of infection. Expression levels of IE1 and WSSV304 were exceptionally high at 1 hpi in almost all five WSSV analyzed strains,confirming their efficient mechanism for replication and viral fitness. The results of this study do not show an accurate link between the genome size and WSSV virulence of the strains, albeit the strain with the smallest genome showed the highest virulence. All strains induced an early immune response in heterogeneous ways."

Penaeus vannamei, virulence, gene expression, viral fitness, viral pathogenesis, immune response BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA ANIMAL (ZOOLOGÍA) PATOLOGÍA ANIMAL PATOLOGÍA ANIMAL

Chronic toxicity of shrimp feed added with silver nanoparticles (Argovit-4®) in Litopenaeus vannamei and immune response to white spot syndrome virus infection

Carlos Rosendo Romo Quiñonez Píndaro Álvarez Ruiz CLAUDIO HUMBERTO MEJIA RUIZ NINA BOGDANCHIKOVA Alexey Pestryakov CARINA GAMEZ JIMENEZ WENCESLAO VALENZUELA QUIÑONEZ Magnolia Montoya Mejía EUSEBIO NAVA PEREZ (2022, [Artículo])

"In recent years, the application of silver nanoparticles (AgNPs) as antibacterial compounds has been widely used in human and veterinary medicine. In this work, we investigated the effects of AgNPs (Argovit-4 R ) as feed additives (feed-AgNPs) on shrimp (Litopenaeus vannamei) using three different methods: 1) chronic toxicity after 28 days of feeding, 2) Effects against white spot syndrome virus (WSSV) challenged by oral route, and 3) transcriptional responses of immune-related genes (PAP, ProPO, CTL-3, Crustin, PEN3, and PEN4) following WSSV infection. The results showed that the feed-AgNPs did not interfere with the growth and survival of shrimp. Also, mild lesions in the hepatopancreas were recorded, proportional to the frequency of the feed-AgNP supply. Challenge test versus WSSV showed that feeding every 7 days with feed-AgNPs reduced mortality, reaching a survival rate of 53%, compared to the survival rates observed in groups fed every 4 days, daily and control groups of feed-AgNPs for the 30%, 10%, and 7% groups, respectively. Feed-AgNPs negatively regulated the expression of PAP, ProPO, and Crustin genes after 28 days of treatment and altered the transcriptional responses of PAP, ProPO, CTL-3, and Crustin after WSSV exposure. The results showed that weekly feeding-AgNPs could partially prevent WSSV infection in shrimp culture. However, whether or not transcriptional responses against pathogens are advantageous remains to be elucidated."

Silver nanoparticles, Shrimp, Aquaculture, Chronic toxicity, WSSV, AgNP, Argovit, Litopenaeus vannamei , Silver fed, White spot syndrome virus BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA INMUNOLOGÍA INMUNIZACIÓN INMUNIZACIÓN

Whole-genome comparison between reference sequences and oyster Vibrio vulnificus C-genotype strains

CARLOS ABRAHAM GUERRERO RUIZ (2019, [Artículo])

Whole-genome sequences of Vibrio vulnificus clinical genotype (C-genotype) from the CICESE Culture Collection, isolated from oysters, were compared with reference sequences of CMCP6 and YJ016 V. vulnificus C-genotype strains of clinical origin. The RAST web server estimated the whole genome to be ~4.8 Mb in CICESE strain 316 and ~4.7 Mb in CICESE strain 325. No plasmids were detected in the CICESE strains. Based on a phylogenetic tree that was constructed with the whole-genome results, we observed high similarity between the reference sequences and oyster C-genotype isolates and a sharp contrast with environmental genotype (E-genotype) reference sequences, indicating that the differences between the C- and E-genotypes do not necessarily correspond to their isolation origin. The CICESE strains share 3488 genes (63.2%) with the YJ016 strain and 3500 genes (63.9%) with the CMCP6 strain. A total of 237 pathogenicity associated genes were selected from reference clinical strains, where—92 genes were from CMCP6, 126 genes from YJ016, and 19 from MO6-24/ O; the presence or absence of these genes was recorded for the CICESE strains. Of the 92 genes that were selected for CMCP6, 67 were present in both CICESE strains, as were as 86 of the 126 YJ016 genes and 13 of the 19 MO6-24/O genes. The detection of elements that are related to virulence in CICESE strains—such as the RTX gene cluster, vvhA and vvpE, the type IV pili cluster, the XII genomic island, and the viuB genes, suggests that environmental isolates with the C-genotype, have significant potential for infection. © 2019 Guerrero et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article, bacterial gene, bacterial strain, bacterial virulence, comparative study, controlled study, gene cluster, gene identification, genomic island, genotype, nonhuman, phylogenetic tree, sequence analysis, strain identification, Vibrio vulnificus BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA