Editorial: Model organisms in plant science: Maize

Manje Gowda (2023, [Artículo])

Model Organism Genomic Selection CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA MAIZE PLANT SCIENCES RESEARCH CROP IMPROVEMENT PLANT PHYSIOLOGY PLANT BREEDING

Erratum: Author Correction: Genetic structure analysis and identifying key founder inbred lines in diverse elite sub-tropical maize inbred lines (Scientific reports (2023) 13 1 (11695))

Melaku Gedil Ana Luisa Garcia-Oliveira Nnanna Unachukwu Cesar Petroli Sarah Hearne Abebe Menkir (2023, [Artículo])

Genetic Relationships Desirable Traits CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA GENETIC STRUCTURES INBRED LINES MAIZE BREEDING PROGRAMMES

Results from rapid-cycle recurrent genomic selection in spring bread wheat

Susanne Dreisigacker Paulino Pérez-Rodríguez Leonardo Abdiel Crespo Herrera Alison Bentley Jose Crossa (2023, [Artículo])

Genomic-Assisted Breeding Molecular Markers Pedigree Information Genomic Prediction CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA GENOMICS GENETIC MARKERS WHEAT BREEDING PROGRAMMES

Genetic diversity and population structure of African sorghum (sorghum bicolor L. moench) accessions assessed through single nucleotide polymorphisms markers

Hussein Shimelis Baloua Nébié Chris Ojiewo Abhishek Rathore (2023, [Artículo])

Heterotic Grouping Breeding Population Development Marker-Assisted Cultivar Development CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA POPULATION STRUCTURE GENE FLOW SINGLE NUCLEOTIDE POLYMORPHISMS SORGHUM BICOLOR BREEDING PROGRAMMES

Genomic selection: A tool for accelerating the efficiency of molecular breeding for development of climate-resilient crops

UTTAM KUMAR Rajeev Ranjan Kumar Philomin Juliana Sundeep Kumar (2022, [Artículo])

Genomic Selection Single-Trait Genomic Selection Multi-Trait Genomic Selection Genomic Estimated Breeding Value Climate-Resilient Crops CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA MARKER-ASSISTED SELECTION CLIMATE CHANGE STRESS CLIMATE RESILIENCE CROPS ABIOTIC STRESS BIOTIC STRESS

Editorial: Genome wide association studies and genomic selection for crop improvement in the era of Big Data

Alison Bentley Charles Chen Nunzio D'Agostino (2022, [Artículo])

Allele Mining High-Throughput Phenotyping Genomic Estimated Breeding Value CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CROP IMPROVEMENT DNA CHROMOSOME MAPPING GENETIC LINKAGE GENOMES GENOTYPING GERMINATION HEAT STRESS QUALITY CONTROL SINGLE NUCLEOTIDE POLYMORPHISM TRITICUM AESTIVUM GENETIC DIVERSITY (AS RESOURCE) HIGH-THROUGHPUT SEQUENCING

Breeding schemes for the implementation of genomic selection in wheat (Triticum spp.)

Filippo Maria Bassi Alison Bentley Rodomiro Ortiz Jose Crossa (2016, [Artículo])

Marker-Aided Breeding CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA BREEDING VALUE GENETIC GAIN GENOTYPE ENVIRONMENT INTERACTION QUANTITATIVE TRAIT LOCI

First record of Band-tailed Pigeon, Patagioenas fasciata (Columbiformes: Columbidae) in the Sonoran Desert of Baja California

Jonathan Gabriel Escobar Flores MARIANA DELGADO FERNANDEZ OSCAR EDUARDO DELGADO GONZALEZ (2016, [Artículo])

"We report the presence of the Band-tailed Pigeon, which was not previously recorded in the Sonoran Desert in Baja California. The site was 140 km south of the nearest forest. The presence of the pigeon further documents the propensity of Band-tailed Pigeons to wander widely."

Baja California Peninsula; Cataviña; desert; forest; riparian vegetation BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA ANIMAL (ZOOLOGÍA) ECOLOGÍA ANIMAL ECOLOGÍA ANIMAL

Assessing the Spatiotemporal Relationship between Coastal Habitats and Fish Assemblages at Two Neotropical Estuaries of the Mexican Pacific

VICTOR MANUEL MURO TORRES FELIPE AMEZCUA MARTINEZ Gerogina Ramírez Ortiz FRANCISCO JAVIER FLORES DE SANTIAGO Felipe Amezcua Linares Yareli Hernández Álvarez (2022, [Artículo])

"Differences in fish assemblages’ structures and their relations with environmental variables (due to the variations in sampled seasons, habitats, and zones) were analyzed in two adjacent estuaries on the north Pacific coast of Mexico. Environmental variables and fish catches were registered monthly between August 2018 and October 2020. Multivariate analyses were conducted to define habitats and zones based on their environmental characteristics, and the effect of this variability on fish assemblages’ composition, biomass, and diversity (α and β) was evaluated. A total of 12,008 fish individuals of 143 species were collected using different fishing nets. Multivariate analyses indicated that fish assemblages’ structures were different between zones due to the presence, height, and coverage of distinct mangrove species. Additionally, depth and salinity showed effects on fish assemblages’ diversity (α and β-nestedness), which presented higher values in the ocean and remained similar in the rest of the analyzed zones and habitats. These results and the differences in species replacement (β-turnover) indicate the singularity of fish assemblages at estuaries (even in areas close to the ocean) and the necessity to establish local management strategies for these ecosystems."

mangrove forests, marine protected areas, alpha diversity, beta diversity, multivariate analyses CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS PECES Y FAUNA SILVESTRE DINÁMICA DE LAS POBLACIONES DINÁMICA DE LAS POBLACIONES

Whole-genome comparison between reference sequences and oyster Vibrio vulnificus C-genotype strains

CARLOS ABRAHAM GUERRERO RUIZ (2019, [Artículo])

Whole-genome sequences of Vibrio vulnificus clinical genotype (C-genotype) from the CICESE Culture Collection, isolated from oysters, were compared with reference sequences of CMCP6 and YJ016 V. vulnificus C-genotype strains of clinical origin. The RAST web server estimated the whole genome to be ~4.8 Mb in CICESE strain 316 and ~4.7 Mb in CICESE strain 325. No plasmids were detected in the CICESE strains. Based on a phylogenetic tree that was constructed with the whole-genome results, we observed high similarity between the reference sequences and oyster C-genotype isolates and a sharp contrast with environmental genotype (E-genotype) reference sequences, indicating that the differences between the C- and E-genotypes do not necessarily correspond to their isolation origin. The CICESE strains share 3488 genes (63.2%) with the YJ016 strain and 3500 genes (63.9%) with the CMCP6 strain. A total of 237 pathogenicity associated genes were selected from reference clinical strains, where—92 genes were from CMCP6, 126 genes from YJ016, and 19 from MO6-24/ O; the presence or absence of these genes was recorded for the CICESE strains. Of the 92 genes that were selected for CMCP6, 67 were present in both CICESE strains, as were as 86 of the 126 YJ016 genes and 13 of the 19 MO6-24/O genes. The detection of elements that are related to virulence in CICESE strains—such as the RTX gene cluster, vvhA and vvpE, the type IV pili cluster, the XII genomic island, and the viuB genes, suggests that environmental isolates with the C-genotype, have significant potential for infection. © 2019 Guerrero et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article, bacterial gene, bacterial strain, bacterial virulence, comparative study, controlled study, gene cluster, gene identification, genomic island, genotype, nonhuman, phylogenetic tree, sequence analysis, strain identification, Vibrio vulnificus BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA