Whole-genome comparison between reference sequences and oyster Vibrio vulnificus C-genotype strains

CARLOS ABRAHAM GUERRERO RUIZ (2019)

Whole-genome sequences of Vibrio vulnificus clinical genotype (C-genotype) from the CICESE Culture Collection, isolated from oysters, were compared with reference sequences of CMCP6 and YJ016 V. vulnificus C-genotype strains of clinical origin. The RAST web server estimated the whole genome to be ~4.8 Mb in CICESE strain 316 and ~4.7 Mb in CICESE strain 325. No plasmids were detected in the CICESE strains. Based on a phylogenetic tree that was constructed with the whole-genome results, we observed high similarity between the reference sequences and oyster C-genotype isolates and a sharp contrast with environmental genotype (E-genotype) reference sequences, indicating that the differences between the C- and E-genotypes do not necessarily correspond to their isolation origin. The CICESE strains share 3488 genes (63.2%) with the YJ016 strain and 3500 genes (63.9%) with the CMCP6 strain. A total of 237 pathogenicity associated genes were selected from reference clinical strains, where—92 genes were from CMCP6, 126 genes from YJ016, and 19 from MO6-24/ O; the presence or absence of these genes was recorded for the CICESE strains. Of the 92 genes that were selected for CMCP6, 67 were present in both CICESE strains, as were as 86 of the 126 YJ016 genes and 13 of the 19 MO6-24/O genes. The detection of elements that are related to virulence in CICESE strains—such as the RTX gene cluster, vvhA and vvpE, the type IV pili cluster, the XII genomic island, and the viuB genes, suggests that environmental isolates with the C-genotype, have significant potential for infection. © 2019 Guerrero et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article

Article, bacterial gene, bacterial strain, bacterial virulence, comparative study, controlled study, gene cluster, gene identification, genomic island, genotype, nonhuman, phylogenetic tree, sequence analysis, strain identification, Vibrio vulnificus BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA

Análisis de redes de coexpresión RNA-Seq para identificar patrones genéticos consenso en Arabidopsis en respuesta a la infección por hongos ascomicetes

CYNTHIA GUADALUPE SOTO CARDINUALT (2023)

Doctoral thesis

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOQUÍMICA BIOLOGÍA MOLECULAR BIOLOGÍA MOLECULAR

Estudio fitoquímico biodirigido de los componentes presentes en Diospyros anisandra S. F. Blake con potencial actividad antiviral a nivel hemaglutinina y neuraminidasa

MARI TOÑA JUAREZ MENDEZ (2021)

Doctoral thesis

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOQUÍMICA BIOLOGÍA MOLECULAR BIOLOGÍA MOLECULAR

Análisis diferencial de expresión génica de los fotosistemas I y II en cloroplastos y proplástidos aislados de plántulas in vitro verdes y albinas de Agave angustifolia Haw.

LUIS FERNANDO NUÑEZ BECERRIL (2024)

Master thesis

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOQUÍMICA BIOLOGÍA MOLECULAR BIOLOGÍA MOLECULAR

Estudio transcriptómico y proteómico de la biogénesis del cloroplasto en el modelo albino de Agave angustifolia Haw.

MAURICIO ANDRADE MARCIAL (2023)

Doctoral thesis

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOQUÍMICA BIOLOGÍA MOLECULAR BIOLOGÍA MOLECULAR

An anion conductance, the essential component of the hydroxyl-radical-induced Ion current in plant roots

IGOR POTTOSIN ALBERTO ISAAC ZEPEDA JAZO JAYACUMAR BOSE (2018)

Oxidative stress signaling is essential for plant adaptation to hostile environments. Previous studies revealed the essentiality of hydroxyl radicals (HO•)-induced activation of massive K+ efflux and a smaller Ca2+ influx as an important component of plant adaptation to a broad range of abiotic stresses. Such activation would modify membrane potential making it more negative. Contrary to these expectations, here, we provide experimental evidence that HO• induces a strong depolarization, from −130 to −70 mV, which could only be explained by a substantial HO•-induced efflux of intracellular anions. Application of Gd3+ and NPPB, non-specific blockers of cation and anion conductance, respectively, reduced HO• induced ion fluxes instantaneously, implying a direct block of the dual conductance. The selectivity of an early instantaneous HO•-induced whole cell current fluctuated from more anionic to more cationic and vice versa, developing a higher cation selectivity at later times. The parallel electroneutral efflux of K+ and anions should underlie a substantial leak of the cellular electrolyte, which may affect the cell’s turgor and metabolic status. The physiological implications of these findings are discussed in the context of cell fate determination, and ROS and cytosolic K+ signaling

Article

BIOQUÍMICA Anions Membrane potentials (Electrophysiology) Patch-clamp techniques (Electrophysiology) Oxidative stress Anion conductance Electrolyte leakage Hydroxyl radical

Aportaciones al género Pestalotiopsis: identificación taxonómica, actividad antagonista y perfil químico de cepas aisladas del trópico y subtrópico de México

KARLA DANAE VERA PEREGRINO (2023)

Master thesis

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOQUÍMICA BIOLOGÍA MOLECULAR BIOLOGÍA MOLECULAR

Propiedades fisicoquímicas del aceite de semillas de Jatropha curcas de poblaciones silvestres en México

NIDIA ARAIZA LIZARDE MIGUEL ANGEL ANGULO ESCALANTE TEODORO REYNOSO GRANADOS MARIA MAGDALENA ORTEGA NIEBLAS Lilia Alcaráz Meléndez Pedro Cruz Hernández (2015)

"Existe la necesidad de estudiar fuentes renovables de energía a partir de plantas oleaginosas con este potencial. La semilla de Jatropha curca se caracteriza por su alto contenido de aceite. En México solo existen estudios enfocados en evaluar las propie-dades fisicoquímicas del aceite de J. curcas silvestre y cultivada en la región sur. El objetivo de este trabajo, fue evaluar las propiedades fisicoquímicas del aceite de J. curcas silvestre en tres ecotipos del estado de Sinaloa (noroeste de México) y su aplicación en la elaboración de biodiesel. Los resultados obtenidos fueron que el contenido de aceite del germen fue de 52 a 56%. La viscosidad, densidad específica, índice de acidez, peróxido, yodo y refracción no mostraron diferencias significativas en las semillas colectadas en los tres ecotipos en estudio. Los ácidos grasos saturados más abundantes fueron el palmítico (4 a 6%) y esteárico (3 a 4%). Los ácidos grasos insaturados más abundantes fueron el oleico (44 a 46%) y linoleico (42 a 44%). Las características fisicoquímicas del aceite de J. curcas de Sinaloa son similares a las del sur de México y otros países, esto sugiere que el germoplasma del noroeste del país podría ser considerado para su conservación, aprovechamiento racional y producción de biodiesel."

"The need for studying sources of renewable energy is important starting from potential oleaginous plants. Jatropha curcas seed is characterized by its high oil content. In Mexico studies are focused on evaluating the physicochemical properties of J. curcas oil in wild plants cultivated in the southern region. The objective of this study was to evaluate these properties in three ecotypes of wild J. curcas of Sinaloa and their oil application in biodiesel production. The oil content of the germ was found to be 52 to 56%. Viscosity, density, acidity index, peroxide, iodine, and refraction showed no signif-icant differences in the seeds collected from the three ecotypes in our study. The most abundant saturated fatty acids were palmitic (4 to 6%) and stearic (3 to 4%). The most abundant unsaturated fatty acids were oleic (44 to 46%) and linoleic (42 to 44%). Physi-cochemical characteristics of J. curcas oil of Sinaloa specimens are similar to those of southern Mexico and other countries, which suggest that the germplasm of the north-western part of the country could be considered for conservation, rational utilization, and biodiesel production."

Article

Fatty acid, ecotype, fatty acid, physicochemical analysis Ácidos grasos, biodiesel, ecotipos, análisis fisicoquímicos, Jatropha BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOQUÍMICA LÍPIDOS LÍPIDOS

Evaluación de la actividad antiviral de epóxido de zeylanona y derivados

IVAN HUMBERTO CHAN ZAPATA (2023)

Doctoral thesis

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOQUÍMICA BIOLOGÍA MOLECULAR BIOLOGÍA MOLECULAR

EVALUACIÓN DE LA ACTIVIDAD Y EXPRESIÓN GÉNICA DE ENZIMAS ANTIOXIDANTES (SOD, GPX, GST, GR y CAT) COMO BIOMARCADORES DE EXPOSICIÓN A FTALATOS EN CULTIVO CELULAR

Elizabeth Brassea Pérez (2023)

"El plastificante bis(2-etilhexilo) ftalato (DEHP) altera el equilibrio entre la producción de especies reactivas de oxígeno y las defensas antioxidantes. A pesar de la información disponible sobre los efectos tóxicos del DEHP en organismos modelo, la respuesta celular al DEHP en especies naturalmente adaptadas para tolerar el estrés oxidativo aún no se ha explorado. Los mamíferos marinos están naturalmente adaptados para hacer frente al estrés oxidativo derivado de la isquemia/reperfusión inducida por el buceo. El objetivo de este estudio fue comparar los cambios en los indicadores de estrés oxidativo asociados al DEHP en células de músculo esquelético de humanos (Homo sapiens sapiens) y lobos marinos de California (Zalophus californianus). Se recolectaron muestras de músculo abdominal de mujeres sanas sometidas a cesárea programada, tras obtener su consentimiento informado. Las muestras de músculo de lobo marino se obtuvieron de crías encontradas recientemente muertas en la colonia de Los Islotes, Golfo de California. Las células de músculo esquelético se aislaron y cultivaron en condiciones estándar. Las células se dividieron en dos grupos. Un grupo fue expuesto a DEHP (1 mM) durante 13 días (n=25; exposición), el otro grupo se mantuvo bajo condiciones control, es decir sin DEHP añadido (n=25; control). Se midió la producción de radical superóxido (O2•-), el daño oxidativo, la actividad de enzimas antioxidantes y la expresión génica mediante métodos espectrofotométricos y RT-qPCR. En células expuestas al DEHP la producción de O2•- y la actividad de superóxido dismutasa (SOD) fueron mayores que en las células bajo condiciones control para ambas especies. La actividad de glutatión S-transferasa (GST) y los niveles de carbonilos proteicos (PC) aumentaron significativamente en las células humanas expuestas a DEHP, y no significativamente en las células de lobo marino. Por el contrario, las actividades de glutatión peroxidasa (GPx) y catalasa (CAT) aumentaron significativamente en las células de lobo marino, pero no en las de humano expuestas a DEHP. Se observó una expresión diferencial de los genes implicados en el metabolismo redox entre las células control y expuestas a DEHP y entre especies. Los patrones de expresión de 26 y 19 genes fueron significativamente diferentes en las células humanas y de lobo marino, respectivamente, después de la exposición a DEHP. En las células humanas, la expresión de la GST1 microsomal y la GST (κ, μ, θ, ω y ᴢ) fue mayor,

"The plasticizer bis (2-ethylhexyl) phthalate (DEHP) dysregulates the balance between reactive oxygen species production and antioxidant defenses. Despite the information available on DEHP’s hazardous effects in model species, the cellular response to DEHP in organisms naturally adapted to tolerate oxidative stress remains unexplored. Marine mammals are naturally adapted to cope with oxidative stress derived from diving-induced ischemia/reperfusion. The objective of this study was to compare changes in oxidative stress indicators induced by DEHP in human (Homo sapiens sapiens) and California sea lion (Zalophus californianus) skeletal muscle cells. Abdominal muscle samples were collected from healthy women undergoing planned cesarean surgery at full term after obtaining informed consent. Sea lion muscle samples were obtained from recently deceased pups at Los Islotes rookery, Gulf of California. Skeletal muscle cells were isolated and cultured under standard conditions. Cells were divided into two groups. One group was exposed to 1 mM DEHP for 13 days (n=25; treatment), and the other served as a control (n=25; no DEHP). Superoxide radical (O2•-) production, oxidative damage, antioxidant enzyme activities and gene expression were measured using spectrophotometric methods and RT-qPCR. DEHP exposure increased O2•- production and superoxide dismutase (SOD) activity in both species. While the activity of glutathione S-transferase (GST) and protein carbonyls (PC) levels significantly increased in human cells, these indicators showed a non-significant elevation in sea lion cells. In contrast, glutathione peroxidase (GPx) and catalase (CAT) activities increased significantly in sea lion but not in human cultures exposed to DEHP. Genes involved in redox metabolism showed differential expression between treatments and species. DEHP exposure led to widespread modifications in gene expression patterns, with 26 and 19 differentially expressed genes in human and sea lion cells, respectively. In human cells, DEHP increased GST1 and GST (κ, μ, θ, ω, and ᴢ), while suppressing 8-oxoguanine DNA glycosylase (OGG1), CAT, GR, and nuclear factor erythroid 2-related factor 2 (NRF2) expression, suggesting increased oxidative stress and phase two detoxification processes. In contrast, DEHP increased OGG1, NRF2, GPx2 and SOD3 expression, suggesting that DEHP activates antioxidant defenses in sea lion cells, potentially contributing to maintain redox homeostasis and avoid oxidative...

Doctoral thesis

Contaminantes emergentes, enzimas antioxidantes, estrés oxidativo, mamíferos, Una Salud Antioxidant enzymes, emerging pollutants, mammals, One Health, oxidative stress BIOLOGÍA Y QUÍMICA QUÍMICA BIOQUÍMICA ENZIMOLOGIA ENZIMOLOGIA