Editorial: Genome wide association studies and genomic selection for crop improvement in the era of Big Data

Alison Bentley Charles Chen Nunzio D'Agostino (2022, [Artículo])

Allele Mining High-Throughput Phenotyping Genomic Estimated Breeding Value CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CROP IMPROVEMENT DNA CHROMOSOME MAPPING GENETIC LINKAGE GENOMES GENOTYPING GERMINATION HEAT STRESS QUALITY CONTROL SINGLE NUCLEOTIDE POLYMORPHISM TRITICUM AESTIVUM GENETIC DIVERSITY (AS RESOURCE) HIGH-THROUGHPUT SEQUENCING

Variación morfológica de las hormigas Myrmecocystus de las dunas costeras de Baja California, México

Morphological variation of Myrmecocystus ants from the coastal dunes of Baja California, Mexico

Samuel Antonio Hernández Jiménez (2023, [Tesis de maestría])

La península de Baja California cuenta con dunas costeras aisladas sobre las cuales se distribuyen hormigas del género Myrmecocystus Snelling, 1976, cuya distribución se restringe en estos hábitats; la artropofauna de estas dunas es poco conocida. Se evaluaron las diferencias morfológicas de Myrmecocystus de seis poblaciones recolectadas a lo largo de la península de Baja California correspondientes a seis dunas. Para medir las diferencias morfológicas de las poblaciones, se analizaron 109 individuos, 20 por cada duna, a excepción de una duna en donde sólo se recolectaron nueve individuos. Para evaluar los cambios de forma intra e interpoblacionales, se analizaron dos estructuras morfológico-funcionales: 1) cabeza, incluyendo el clípeo relacionada con la competencia y alimentación y 2) tórax, incluyendo el propodeo, que muestra la diferencia de casta entre obreras. Con una cámara fija montada en un microscopio estereoscópico se tomaron 198 microfotografías digitales, para evaluar cambios de forma mediante un análisis de morfometría geométrica. Se detectaron diferencias asociadas al aislamiento geográfico. La variación observada en la cabeza puede ayudar a diferenciar las poblaciones del norte de la península (Santa Rosaliíta, Punta Mazo, Guerrero Negro y Punta Abreojos) y las del sur (Las Barrancas y Bahía Magdalena), la variación morfológica del tórax no mostró diferencias significativas. Existen variaciones intraespecíficas que podrían ser consecuencia de las condiciones ambientales (fenotípicas) o por procesos aleatorios como la deriva génica. El presente estudio arroja datos de la variación morfológica de seis poblaciones que representan dos especies de Myrmecocystus aun no descritas para la península de Baja California. Estos resultados repercutirán en la descripción y un aumento documentado de la biodiversidad de la artropofauna bajacaliforniana.

The Baja California peninsula has isolated coastal dunes on which ants of the genus Myrmecocystus Snelling, 1976 are distributed, whose distribution is restricted in these habitats; The arthropofauna of these dunes is poorly understood. The morphological differences of Myrmecocystus were evaluated from six populations collected along the Baja California peninsula corresponding to six dunes. To measure the morphological differences of the populations, 109 individuals were analyzed, 20 for each dune, except for one dune where only nine individuals were collected. To evaluate intra- and interpopulation shape changes, two morphological-functional structures were analyzed: 1) head, including the clypeus related to competition and feeding, and 2) thorax, including the propodeum, which shows the caste difference between workers. With a fixed camera mounted on a stereoscopic microscope, 198 digital microphotographs were taken to evaluate shape changes through a geometric morphometry analysis. Differences associated with geographic isolation were detected. The variation observed in the head can help to differentiate the populations of the north of the peninsula (Santa Rosaliíta, Punta Mazo, Guerrero Negro, and Punta Abreojos) and those of the south (Las Barrancas and Magdalena Bay), the morphological variation of the thorax did not show significant differences. There are intraspecific variations that could be a consequence of environmental conditions (phenotypic) or random processes such as gene drift. The present study yields data on the morphological variation of six populations representing two species of Myrmecocystus not yet described for the Baja California peninsula. These results will have an impact on the description and a documented increase in the biodiversity of the Baja Californian arthropofauna.

Alometría, Especiación, Morfometría Geométrica, Forma, Especies no descritas Allotometry, Speciation, Geometric Morphometry, Shape, Undescribed Species BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA DE INSECTOS (ENTOMOLOGÍA) MORFOLOGÍA DE LOS INSECTOS MORFOLOGÍA DE LOS INSECTOS

Shopping for Ecological Indices? On the Use of Incidence-Based Species Compositional Similarity Measures

IAN MACGREGOR FORS FEDERICO ESCOBAR SARRIA JUAN FERNANDO ESCOBAR IBAÑEZ NATALIA MESA SIERRA FREDY ALEXANDER ALVARADO ROBERTO Rafael Rueda Hernández CLAUDIA ELIZABETH MORENO ORTEGA Ina Falfán ERICK JOAQUIN CORRO MENDEZ Eduardo Octavio Pineda Arredondo Amandine Bourg JOSE LUIS AGUILAR LOPEZ (2022, [Artículo])

"β-diversity has been under continuous debate, with a current need to better understand the way in which a new wave of measures work. We assessed the results of 12 incidence-based β-diversity indices. Our results of gradual species composition overlap between paired assemblages considering progressive differences in species richness show the following: (i) four indices (β-2, β-3, β-3.s, and βr) should be used cautiously given that results with no shared species retrieve results that could be misinterpreted; (ii) all measures conceived specifically as partitioned components of species compositional dissimilarities ought to be used as such and not as independent measures per se; (iii) the non-linear response of some indices to gradual species composition overlap should be interpreted carefully, and further analysis using their results as dependent variables should be performed cautiously; and (iv) two metrics (βsim and βsor) behave predictably and linearly to gradual species composition overlap. We encourage ecologists using measures of β-diversity to fully understand their mathematical nature and type of results under the scenario to be used in order to avoid inappropriate and misleading inferences."

Beta diversity Nestedness Replacement Richness difference Species turnover BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL

Rust research to enhance resistance durability

sridhar bhavani (2022, [Objeto de congreso])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA RUSTS DISEASE RESISTANCE SPRING WHEAT GENETIC DIVERSITY (AS RESOURCE) ADULT PLANT RESISTANCE

Types of resistance

sridhar bhavani (2022, [Objeto de congreso])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA RUSTS DISEASE RESISTANCE WHEAT GENETIC DIVERSITY (AS RESOURCE) ADULT PLANT RESISTANCE

Rust research to enhance resistance durability

sridhar bhavani (2023, [Objeto de congreso])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA RUSTS DISEASE RESISTANCE SPRING WHEAT GENETIC DIVERSITY (AS RESOURCE) ADULT PLANT RESISTANCE

La Funcionalidad Física Arrecifal, indicador de la diversidad funcional en ensamblajes de peces de arrecifes en el Parque Nacional Islas Marietas, Nayarit, México

Reef Physical Functionality, indicator of functional diversity on reef fishes assemblages from Islas Marietas National Park, Nayarit, Mexico

Luis Mario Montalvo Jaramillo (2023, [Tesis de maestría])

La ecología funcional se basa en el uso de rasgos funcionales; características de las especies (morfológicas, fisiológicas, comportamiento) medidas a nivel individual que influencian el rendimiento de una especie, siendo de gran utilidad para determinar cambios dentro del ecosistema. El presente trabajo busca evaluar la funcionalidad física como indicador de disponibilidad de hábitat de peces y su relación con la diversidad funcional. La funcionalidad física del arrecife se evaluó mediante el IFA integrando datos de cobertura coralina, complejidad estructural y tasa de calcificación. La estructura de los ensamblajes de peces se analizó mediante el cálculo de índices de diversidad funcional (riqueza, equitatividad y divergencia) con base en cuatro rasgos funcionales (tamaño corporal, movilidad, tipo de agregación y dieta). La relación entre la diversidad funcional del ensamblaje y el IFA se evaluó mediante un análisis de regresión lineal. El IFA fue influenciado de manera positiva por la presencia Pocilloporidos al generar un mayor aporte a la funcionalidad física (FF) y consecuentemente, una mayor provisión de hábitat. Por el contrario, el IFA disminuyó con la presencia de Porites panamensis debido a su baja tasa de calcificación.La diversidad funcional de los ensamblajes no presentó variaciones temporales, atribuible a una baja variabilidad entre los sitios debido a una alta cercanía, baja variacion batimétrica y alta conectividad. La relación entre el IFA y la riqueza funcional de los ensamblajes se atribuye a que sitios con mayor funcionalidad física otorgan disponibilidad de hábitat y refugio contra la depredación a especies crípticas, de talla pequeña y juveniles; ya que, especies de este tipo se asocian a hoyos similares a su tamaño corporal y la supervivencia de las mismas aumenta en sustratos más complejos.

Functional diversity it’s based on functional traits; characteristics of species (morphological, physiological, behavior) measured at individual level that impact their performance and have great utility to determine changes within the ecosystem. This work aims to evaluate physical functionality as indicator of fish habitat availability and its relationship with functional diversity. The physical functionality of the reef was evaluated using the RFI, integrating data on coral cover, structural complexity, and calcification rate. The structure of the fish assemblages was analyzed by calculating functional diversity index (richness, evenness, and divergence) based on four functional traits (body size, mobility, type of aggregation and diet). The relationship between functional diversity and RFI was evaluated using linear regression analysis. The RFI was influenced on positive way for the presence of Pocilloporids due to the great contribution to physical functionality (PF) creating more habitat availability. For the other hand, the RFI was influenced on negative way for the presence of Porites panamensis due their low calcification rate. The functional diversity of the assemblages did not present temporal variations, attributable to a low variability between the sites due high proximity, low bathymetric variation and high connectivity. The relationship between RFI and the functional richness of the assemblages is attributed to fact that sites with greater physical functionality provide more availability of habitat and refuge against predation to cryptic, small and juvenile species; species of this type are associate with holes similar to their body size and their survival increases in more complex substrates.

Pacífico Méxicano, Índice de Función Arrecifal, Diversidad Funcional, Arrecife Reef, Functional Diversity, Reef Functional Index, Mexican Pacific BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA OTRAS ESPECIALIDADES DE LA BIOLOGÍA OTRAS OTRAS

Estimación de los flujos de materia y energía en la Reserva de Bahía de los Ángeles, Canales de Ballenas y de Salsipuedes, mediante un modelo de balance de masas

Estimation of the flows of matter and energy in Bahía de los Ángeles, Canales de Ballenas y de Salsipuedes Reserve, using a mass balance model

Ana Lilia Perea Rojas (2023, [Tesis de maestría])

La Reserva de la Biósfera de Bahía de Los Ángeles, Canales de Ballenas y de Salsipuedes (RB-BLACS) es un área natural protegida que provee de distintos servicios ambientales a los pobladores de la comunidad de Bahía de Los Ángeles. Tiene una gran importancia ecológica por la diversidad de especies que habitan en ella y para las especies migratorias que la utilizan, algunas de las cuales se encuentran enlistadas dentro de la NOM-059-SEMARNAT-2001. Con objeto de estimar el efecto de la pesca sobre el ecosistema se construyó un modelo de balance de masas empleando Ecopath con Ecosim. Mediante una revisión documental, se definieron 32 grupos funcionales (GF) y se construyó una matriz de dietas. El modelo se parametrizó con los valores de biomasa (B), relación producción/biomasa (P/B) y se obtuvieron los valores de eficiencia ecotrófica (EE) y relación producción/consumo (P/Q). El rendimiento total del sistema (TST) fue de 13,689 t/km2/año. El nivel trófico de la captura de 3.48 y la producción neta del sistema de 4,641 t/km2/año. La matriz de impactos tróficos mixtos muestra que los grupos que sufren mayor impacto negativo por los Tiburones son los Odontocetos, Misticetos y Tortugas. Se simularon los cambios en la biomasa relativa de los GF bajo escenarios de incremento y decremento del esfuerzo pesquero (5 y 10%) y no pesca, en un lapso de 10 años. Se encontró que los cambios en el esfuerzo pesquero de Elasmobranquios y los Peces de escama son los que mayor efecto tienen sobre otros GF. Resalta que suspender la pesca tendría poco efecto, tanto positivo como negativo (2-3%) sobre la biomasa relativa de los GF, excepto Tiburones y rayas, que incrementarían 245 y 124%, respectivamente. Este modelo podría utilizarse para la toma de decisiones en el manejo y conservación del ecosistema.

The Biosphere Reserve of Bahía de Los Ángeles, Canales de Ballenas y de Salsipuedes (RB-BLACS) is a natural protected area that provides different environmental services to the residents of the community of Bahía de Los Ángeles. It has great ecological importance due to the diversity of species that inhabit it and the migratory species that use it, some of which are listed within NOM-059- SEMARNAT-2001. To estimate the effect of fishing on the ecosystem, a mass balance model was built using Ecopath with Ecosim. Through a documentary review, 32 functional groups (GF) were defined, and a diet matrix was constructed. The model was parameterized with the values of biomass (B), production/biomass ratio (P/B) and the values of ecotrophic efficiency (EE) and production/consumption ratio (P/Q) were obtained. The total system throughput (TST) was 13,689 t/km2/year. The trophic level of the capture is 3.48 and the net production of the system is 4,641 t/km2/year. The matrix of mixed trophic impacts shows that the groups that suffer the greatest negative impact from Sharks are Odontocetes, Mysticetes and Turtles. Changes in the relative biomass of GF were simulated under scenarios of increase and decrease in fishing effort (5 and 10%) and no fishing, over a period of 10 years. It was found that changes in the fishing effort of Elasmobranchs and Finfish have the greatest effect on other GFs. It highlights that suspending fishing would have little effect, both positive and negative (2-3%) on the relative biomass of GFs, except for sharks and rays, which would increase 245 and 124%, respectively. This model could be used for decision making in the management and conservation of the ecosystem.

Ecopath con Ecosim, socio-ecosistema, Golfo de California, pesquerías, conservación Ecopath with Ecosim, socio-ecosystem, Gulf of California, fisheries, conservation BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA OTRAS ESPECIALIDADES DE LA BIOLOGÍA OTRAS OTRAS

Genetic analysis of Vibrio parahaemolyticus O3:K6 strains that have been isolated in Mexico since 1998

CARLOS ABRAHAM GUERRERO RUIZ (2017, [Artículo])

Vibrio parahaemolyticus is an important human pathogen that has been isolated worldwide from clinical cases, most of which have been associated with seafood consumption. Environmental and clinical toxigenic strains of V. parahaemolyticus that were isolated in Mexico from 1998 to 2012, including those from the only outbreak that has been reported in this country, were characterized genetically to assess the presence of the O3:K6 pandemic clone, and their genetic relationship to strains that are related to the pandemic clonal complex (CC3). Pathogenic tdh+ and tdh+/trh+ strains were analyzed by pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST). Also, the entire genome of a Mexican O3:K6 strain was sequenced. Most of the strains were tdh/ORF8-positive and corresponded to the O3:K6 serotype. By PFGE and MLST, there was very close genetic relationship between ORF8/O3:K6 strains, and very high genetic diversities from non-pandemic strains. The genetic relationship is very close among O3:K6 strains that were isolated in Mexico and sequences that were available for strains in the CC3, based on the PubMLST database. The whole-genome sequence of CICESE-170 strain had high similarity with that of the reference RIMD 2210633 strain, and harbored 7 pathogenicity islands, including the 4 that denote O3:K6 pandemic strains. These results indicate that pandemic strains that have been isolated in Mexico show very close genetic relationship among them and with those isolated worldwide. © 2017 Guerrero et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article, bacterial strain, biofouling, controlled study, Crassostrea, food intake, gene sequence, genetic analysis, genetic variability, Japan, Mexican, Mexico, molecular phylogeny, nonhuman, pandemic, pathogenicity island, sea food, serotyping, toxi BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA

Heterosis and heterotic patterns of maize germplasm revealed by a multiple-hybrid population under well-watered and drought-stressed conditions

Liu Xiaogang Yunbi Xu (2022, [Artículo])

Heterotic Pattern CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA DROUGHT STRESS GENETIC DISTANCE HETEROSIS MAIZE HETEROTIC GROUPS