Development of a next generation SNP genotyping array for wheat

Simon Griffiths Susanne Dreisigacker Alison Bentley Gina Brown-Guedira (2023, [Artículo])

Axiom Array High Throughput Genotyping Hexaploid Wheat Copy Number Variation Analysis CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA SINGLE NUCLEOTIDE POLYMORPHISMS WHEAT GENOTYPING GENETIC DIVERSITY (AS RESOURCE)

Phenotypic assessment of genetic gain from selection for improved drought tolerance in semi-tropical maize populations

Terence Molnar Somak Dutta Thanda Dhliwayo Samuel Trachsel Michael Lee (2023, [Artículo])

Drought Tolerant Population Topcross Water Deficit CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA DROUGHT TOLERANCE WATER MAIZE CLIMATE CHANGE GENETIC GAIN

GENERATION OF LG VECTOR MODES WITH ULTRAHIGH STABILITY BASED ON COMPLEX AMPLITUDE MODULATION IN AN ON-AXIS CONFIGURATION

Gloria Elizabth Rodríguez García (2023, [Tesis de maestría])

"This thesis presents a novel technique for generating vector beams using complex amplitude modulation (CAM) in an on-axis configuration. The holograms used to generate the beams were created using the Mathlab software and displayed on a reflective spatial light modulator (SLM). The main goal of this research was to address both the purity and stability of the beams during generation and propagation, introducing a quantitative approach to assess their stability. As a proof-of-concept, Laguerre-Gaussian vector beams have been generated and characterized using Stokes polarimetry with the proposed experimental set up."

Structured light Laguerre-Gauss vector beams Stokes polarimetry Beam generation Spatial light modulators CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA FÍSICA ÓPTICA OPTICA FÍSICA OPTICA FÍSICA

Geospatial analysis of the distribution of empty spaces located in Nuevo Laredo, Tamaulipas

Claudio Curzio HECTOR DE LA TORRE GUTIERREZ (2021, [Artículo, Artículo])

Reflect about urban empty spaces means looking around all these lots that are distributed in different geographical points of the cities and are characterized because they are still waiting to be built, therefore, they are vacant, and also these spaces are empty in the sense of not provide any function. In this sense, the objective of this article is to present a methodological proposal specially designed to study this type of urban elements from the particular point of view of urban geography and spatial analysis. Specifically, through a series of surveys, both digital and physical, the various urban voids located in the city of Nuevo Laredo were recorded, thereby creating a database that included a total of 3,836 case studies. In this way, using different types of statistical techniques and spatial models, it was possible to obtain and interpret the results, managing to identify exactly what were the main patterns and characteristics of said geographic distribution.

empty spaces urban vacant lots geo-spatial analysis urban geography border in Nuevo Laredo Vacíos urbanos lotes baldíos análisis geo-espacial geografía urbana frontera en Nuevo Laredo Geografía urbana economía urbana morfología urbana CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA

Variación espacio-temporal del ensamblaje de peces criptobentónicos y conspicuos en dos áreas naturales protegidas, Bahía de los Ángeles y Huatulco

Spatial and temporal variation of the assemblage of cryptobenthic and conspicuous reef fish in two protected natural areas, Bahía delos Ángeles and Huatulco

Rodrigo Daniel Chiriboga Ortega (2023, [Tesis de maestría])

Los peces arrecifales desempeñan roles ecológicos muy importantes manteniendo la salud de los arrecifes siendo limpiadores, recicladores de materia orgánica y además fuente de alimento entre eslabones de la cadena trófica. El presente trabajo busca describir el ensamblaje de peces arrecifales crípticos y conspicuos, y evaluar los patrones espaciales y temporales del ensamblaje de peces arrecifales en Bahía de Los Ángeles, Baja California (BLA) y el Parque Nacional Huatulco (PNH), Oaxaca. Utilizamos dos métodos de muestreo censos visuales y estaciones cerradas. Para evaluar a los peces conspicuos, se realizaron censos visuales empleando transectos de banda de 20x4 m. Para cuantificar la biodiversidad de peces crípticos, se realizaron estaciones cerradas (0.4 m2 ) en donde se utilizó aceite de clavo como anestésico para recolectar los peces arrecifales criptobentónicos (PACr). Las dos metodologías se realizaron en dos gradientes de profundidad (somero; < 5 m y profundo; > 5 m) y en dos estaciones (cálida y fría). Se realizaron curvas de acumulación de especies y un análisis del número efectivo de especies para describir la riqueza y diversidad de cada zona de estudio. Finalmente, para determinar patrones espacio temporales se realizaron análisis nMDS, PERMANOVAS y SIMPER. La riqueza total fue de 43 especies para BLA y 62 para el PNH representando el 80% y 79% del promedio de los estimadores no paramétricos respectivamente. Se aumentó el número de especies registradas a 94 para BLA y 209 para el PNH utilizando las estaciones cerradas. Se observaron diferencias significativas entre estaciones y profundidad en el ensamblaje de PACs de BLA, pero no para los PACr. En el PNH se observaron diferencias significativas para la riqueza y abundancia de los PACr y variación temporal de la biomasa de los PACs. En conclusión se demostró que el uso de métodos de muestreo complementarios mejora la calidad de los inventarios de especies y permite detectar variaciones espacio temporales en la estructura de la comunidad íctica.

Reef fishes perform important ecological roles in maintaining reef health by cleaning and recycling organic material, and by providing a source of food between trophic linkages. The thesis describes cryptic and conspicuous reef fish assemblages and estimates their spatial and temporal patterns of in two sites, Bahía de Los Ángeles (BLA) in the state of Baja California and Huatulco National Park (PNH), in the state of Oaxaca. We used two sampling methods: visual census using SCUBA (band transects of 4x20m) for conspicuous reef fish (PAC) and enclosed stations (0.4 m2) using clove oil to anesthetize and collect the cryptobenthic reef fish (PACr). Sampling was conducted at two depth strata (shallow; < 5 m and deep; > 5m) and during two seasons (warm and cold). We used species accumulation curves and analysis of effective number of species to describe the richness and diversity of reef fish. Finally, nMDS, PERMANOVAS and SIMPER were performed to determine spatial and temporal patterns. The total species richness was 43 species for BLA and 62 species for the PNH, representing 80% and 79%, respectively, of the average of the non-parametric estimators. The number of species increased to 94 for BLA and 209 for PNH using enclosed stations. Significant differences between seasons and depth strata were found for the PACs assemblage at the BLA site, but not for the PACr assemblage. At the PNH site, significant differences were found for the richness and abundance of the PACr assemblage for depth as well as for the seasonal variation of the biomass of the PACs assemblage. In conclusion we demonstrated that the use of complementary sampling methods improves the quality of species inventories and allows for the detection of both spatial and temporal variations in the structure of the reef fish community.

diversidad, peces arrecifales, criptobentónico, biomasa, espacio-temporal biodiversity, reef fishes, cryptobenthic, biomass, spatial-temporal CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS PECES Y FAUNA SILVESTRE DINÁMICA DE LAS POBLACIONES DINÁMICA DE LAS POBLACIONES

Variación fenotípica de caracteres vegetativos y reproductivos de Hesperoyucca whipplei (Asparagaceae) en Baja California, México

Phenotypic variation of vegetative and reproductive traits of Hesperoyucca whipplei (Asparagaceae) in Baja California, Mexico

Melissa Michelle Alvarez Mexia (2024, [Tesis de maestría])

La variación fenotípica hereditaria de diferentes órganos de las plantas se ha relacionado con adaptaciones para tolerar el ambiente abiótico y mantener relaciones ecológicas. Específicamente se ha planteado que los órganos vegetativos de las plantas están bajo selección por disponibilidad de agua o luz, mientras que la variación de rasgos florales en especies con polinización zoocórica está fuertemente influenciada por sus polinizadores. Esto sugiere que la fortaleza de la covariación fenotípica entre órganos vegetativos y florales puede ser diferente dependiendo del estrés ambiental considerado. Según la hipótesis de Berg, las plantas con sistemas de polinización especializados desvinculan la morfología floral de la variación fenotípica en los caracteres vegetativos debido a la presión selectiva del polinizador. Se probó esto en la yuca de chaparral, Hesperoyucca whipplei, ya que se distribuye en diferentes ambientes a lo largo de la península de Baja California, y es polinizada únicamente por la polilla Tegeticula maculata. Esperamos que la heterogeneidad ambiental afecte principalmente a los niveles de variación fenotípica de los órganos vegetativos de las poblaciones de H. whipplei, causando cambios en la morfología entre poblaciones. Sin embargo, dada la polinización obligada, esperamos que la variación de los rasgos florales sea menor que la variación de sus rasgos vegetativos. Para probarlo, se tomaron datos morfométricos vegetativos y reproductivos de 202 individuos en 16 localidades. Los resultados mostraron amplia variación fenotípica en los caracteres vegetativos y reproductivos no florales y una menor variación fenotípica en los caracteres florales, especialmente el pistilo, con el cual interactúa directamente el polinizador. La temperatura y precipitación influyeron significativamente en la variación de la altura total de la planta y sobre los pétalos y pistilo en las flores. Se detectó una asociación entre los caracteres vegetativos y los reproductivos no florales, mientras que no se encontró una relación con los caracteres florales. A partir de esto se identificaron dos módulos fenotípicos altamente integrados, uno vegetativo y uno floral, lo que respalda la hipótesis de Berg y sugiere que experimentan presiones de selección diferentes. Nuestros hallazgos resaltan como la variación fenotípica en poblaciones de plantas es modulada por condiciones ambientales e interacciones ecológicas.

Hereditary phenotypic variation of different plant organs has been related to adaptations that allow them to tolerate the abiotic environment and maintain ecological relationships with other organisms. Specifically, it has been proposed that the vegetative organs of the plants are under selection due to the availability of water or sunlight, while the variation of floral traits in species with zoochoric pollination is strongly influenced by their pollinators. This suggests that the strength of the phenotypic co-variation between vegetative and floral organs may be different depending on the environmental stress considered. According to Berg's hypothesis, plants with specialized pollination systems dissociate floral morphology from phenotypic variation in vegetative traits due to selective pressure from the pollinator. The chaparral yuca, Hesperoyucca whipplei, is a good model to test this, since it is distributed in different environments along the Baja California peninsula, and this plant is pollinated only by the Tegeticula maculata moth. We expect that environmental heterogeneity primarily affects the levels of phenotypic variation of the vegetative organs of H. whipplei populations, causing changes in morphology between populations. However, given the obligatory pollination by the moth, we expect that the variation in the floral traits will be lesser than the variation in their vegetative traits. To test this, vegetative and reproductive morphometric data were taken from 202 individuals in 16 locations. The results showed wide phenotypic variation in vegetative and non-floral reproductive traits and lower phenotypic variation in floral traits, especially the pistil, which directly interacts with the pollinator. Temperature and precipitation significantly influenced the variation of the total height of the plant and on the petals and pistil in the flowers. An association was detected between vegetative and non-floral reproductive characters, while no relationship was found with floral characters. From this, two highly integrated phenotypic modules, one vegetative and one floral, were identified, which supports Berg's hypothesis and suggests that they experience different selection pressures. Our findings highlight how phenotypic variation in plant populations is modulated by environmental conditions and ecological interactions.

Baja California, Hesperoyucca whipplei, hipótesis de Berg, variación fenotípica Baja California, Berg’s hypothesis, Hesperoyucca whipplei, phenotypic variation BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL

Climate change and the northern elephant seal (Mirounga angustirostris) population in Baja California, Mexico

M. Concepción García-Aguilar (2018, [Artículo])

The Earth0s climate is warming, especially in the mid- and high latitudes of the Northern Hemisphere. The northern elephant seal (Mirounga angustirostris) breeds and haul-outs on islands and the mainland of Baja California, Mexico, and California, U.S.A. At the beginning of the 21st century, numbers of elephant seals in California are increasing, but the status of Baja California populations is unknown, and some data suggest they may be decreasing. We hypothesize that the elephant seal population of Baja California is experiencing a decline because the animals are not migrating as far south due to warming sea and air temperatures. Here we assessed population trends of the Baja California population, and climate change in the region. The numbers of northern elephant seals in Baja California colonies have been decreasing since the 1990s, and both the surface waters off Baja California and the local air temperatures have warmed during the last three decades. We propose that declining population sizes may be attributable to decreased migration towards the southern portions of the range in response to the observed temperature increases. Further research is needed to confirm our hypothesis; however, if true, it would imply that elephant seal colonies of Baja California and California are not demographically isolated which would pose challenges to environmental and management policies between Mexico and the United States. © 2018 García-Aguilar et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

air temperature, article, Baja California, climate change, human, Mirounga angustirostris, nonhuman, population size, warming, animal, ecosystem, environmental protection, Mexico, Phocidae, population density, population migration, temperature, Anima CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Estudios de genética en poblaciones de abulón y sus aplicaciones en ordenamiento pesquero

RICARDO PEREZ ENRIQUEZ NOE DIAZ VILORIA JOSE LUIS GUTIERREZ GONZALEZ ALEJANDRA ARCINIEGA DE LOS SANTOS ADRIANA MAX AGUILAR Pedro Cruz Hernández Fernando Aranceta Garza (2016, [Artículo])

"Se presenta la integración de más de 10 años de investigación científica en genética de las poblaciones de abulón en México realizada en el CIBNOR. Esta investigación muestra cómo se pueden aplicar los marcadores genéticos tanto en estudios de genética poblacional como en identificación forense con la finalidad de contribuir al conocimiento aplicado para manejo de la pesquería. Se desarrollaron marcadores genéticos tipo microsatélites de ADN enfocados tanto al abulón azul Haliotis fulgens como amarillo Haliotis corrugata para diferenciación de poblaciones y análisis de parentesco. Un análisis de estructura genética de las poblaciones silvestres de ambas especies de abulón mostró homogeneidad genética en la costa del Pacífico en la región centro-sur de la Península de Baja California, México, pero con diferenciación genética en localidades distantes debido a un flujo genético limitado producto del aislamiento reproductivo. Por ello, no existen elementos que den soporte a un manejo pesquero delimitado por bancos en ambas especies. De manera particular, el abulón amarillo mostró una menor de diversidad genética que el azul, posiblemente debido a una mayor explotación pesquera histórica. Los resultados obtenidos en pruebas de parentesco han indicado que la retención larvaria en bancos específicos es reducida, por lo que ni la agregación de reproductores ni la liberación de larvas han mostrado ser estrategias eficientes para favorecer el incremento de reclutas en bancos definidos. Un análisis de perfiles genéticos con el gen de la lisina permitió la identificación de las especies de abulón que se capturan y enlatan en México. El análisis comparativo de perfi les genéticos, basado en el gen nuclear 18S de abulón y otros moluscos, detectó producto enlatado conteniendo especies de moluscos comercializadas falsamente como abulón, lo que puede constituirse como una herramienta forense en futuras disputas legales. Este tipo de aplicación es potencialmente utilizable con otros productos comestibles en los cuales se sospecha de prácticas fraudulentas, ya sea por captura o comercialización ilegal o por sustitución de contenidos en productos procesados."

"This is an integrative work of more than 10 years of research in population genetics of abalone in Mexico performed at CIBNOR. It shows how molecular tools have the potential to support abalone fisheries management through population genetics and forensic analyses. Microsatellite DNA markers were developed on blue (green for its name in English) Haliotis fulgens and yellow abalone (pink for its name in English) H. corrugata to be used for genetic differentiation on populations and for parentage analysis. The analysis of genetic structure on wild populations of both species revealed genetic homogeneity in the Pacific coast of the central region of the Baja California Peninsula, Mexico, with genetic differentiation on distant localities due to a limited gene flow as a result of reproduction isolation. From this result we suggest that no evidences were found supporting the management of the fishery based on individual abalone beds. Pink abalone shows lower genetic diversity than green abalone, possibly due to higher historical fishery exploitation. The parentage analysis suggested that larval retention within beds is reduced, indicating that neither broodstockaggregation nor the release of abalone larvae for stock enhancement are efficient strategies to increase recruitment in specific beds.

An analysis of the genetic profiles with the lysine gene allowed the identification of abalone species captured and processed in Mexico. The comparative analysis, based on the 18S gene, among abalone and other mollusks, detected canned product containing mollusks that are commercialized allegedly as abalone or ‘abalone type’, which could constitute a forensic tool in future legal disputes. This type of application can also be used with other edible products in which fraudulent practices are suspected either because of illegal catch or commercialization or substitution in processed products."

Análisis forense, diversidad genética, gen 18S, genética de poblaciones, marcadores genéticos, retención larvaria Forensic analysis, genetic diversity, 18S gene, genetic markers, population genetics, larval retention BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA DE POBLACIONES GENÉTICA DE POBLACIONES

Los seres alados y solares del arte maya en el Norte de Yucatán

Rubén Morante (2023, [Capítulo de libro])

En nuestro trabajo de campo en el norte de Yucatán estudiamos la iconografía de sitios como Chichén Itzá, Ek Balam y Mayapán. En ellos observamos esculturas con gran calidad artística de seres humanos que portan alas y que, por ello, se presentan como seres celestes relacionados con deidades del panteón maya de los periodos Clásico tardío, Clásico terminal y Posclásico temprano. Para esta investigación partimos de un breve contexto etnohistórico, geográfico y arqueológico de otros sitios mayas, del centro y oriente de México, incluyendo imágenes de códices y pinturas que nos hablan del posible significado que las plumas, las alas y las aves tuvieron en Mesoamérica. Procedimos al análisis de las figuras aladas que se presentan en relación con importantes edificios de sitios del norte de Yucatán. La advocación solar que sugieren parece haber sido común y en esta zona, no sólo hablan de los grandes artistas que los esculpieron, sino de un sistema de creencias que pudo emanar de tradiciones mayas muy tempranas, que en el siglo IX d.C. se manifiesta de manera clara mediante un estilo depurado, una maestría técnica y una alta sensibilidad estética.

In our field work in northern Yucatán we studied the iconography of sites such as Chichén Itzá, Ek Balam, and Mayapán. There we saw great artistic quality sculptures of human beings that carry wings, and because of that we think that represented celestial beings related to deities of the Mayan pantheon of Late Classic, Terminal Classic and Early Postclassic periods. In our research we started with reviews of ethnohistorical, geographical and archaeological contexts in other Mayan sites, from central and eastern Mexico, including images from codices and paintings that tell us about the possible meaning of feathers, wings and birds in Mesoamerica. We proceeded analyze winged figures presented in relation to important buildings in northern Yucatán sites. Solar evocation suggested probably was common in this area and, sculptures not only speak about belief systems that could emanate from very early Mayan traditions, but also speak about great artists, that in 9th century AD. clearly manifested it through a refined style, technical mastery and high aesthetic sensitivity.

Arte maya, seres alados, Norte de Yucatán, Chchén Itzá, Ek Balam. Mayan art, feathers and birds, Northern Yucatán. Maya art--Themes, motives. Maya arts--Mexico--Yucatán (State) Maya sculpture--Themes, motives. Maya mythology. Arte maya. Mitología maya. F1435.3.A7 HUMANIDADES Y CIENCIAS DE LA CONDUCTA CIENCIAS DE LAS ARTES Y LAS LETRAS TEORÍA, ANÁLISIS Y CRÍTICA DE LAS BELLAS ARTES

Effects of geostrophic kinetic energy on the distribution of mesopelagic fish larvae in the southern Gulf of California in summer/fall stratified seasons

FERNANDO CONTRERAS CATALA (2016, [Artículo])

Effects of geostrophic kinetic energy flux on the three-dimensional distribution of fish larvae of mesopelagic species (Vinciguerria lucetia, Diogenichthys laternatus, Benthosema panamense and Triphoturus mexicanus) in the southern Gulf of California during summer and fall seasons of stronger stratification were analyzed. The greatest larval abundance was found at sampling stations in geostrophic kinetic energy-poor areas (&lt;7.5 J/m3), where the distribution of the dominant species tended to be stratified. Larvae of V. lucetia (average abundance of 318 larvae/10m2) and B. panamense (174 larvae/10m2) were mostly located in and above the pycnocline (typically ∼ 40 m depth). In contrast, larvae of D. laternatus (60 larvae/10m2) were mainly located in and below the pycnocline. On the other hand, in sampling stations from geostrophic kinetic energy-rich areas (&gt; 21 J/m3), where mesoscale eddies were present, the larvae of the dominant species had low abundance and were spread more evenly through the water column, in spite of the water column stratification. For example, in a cyclonic eddy, V. lucetia larvae (34 larvae/10m2) extended their distribution to, at least, the limit of sampling 200 m depth below the pycnocline, while D. laternatus larvae (29 larvae/10m2) were found right up to the surface, both probably as a consequence mixing and secondary circulation in the eddy. Results showed that the level of the geostrophic kinetic energy flux affects the abundance and the three-dimensional distribution of mesopelagic fish larvae during the seasons of stronger stratification, indicating that areas with low geostrophic kinetic energy may be advantageous for feeding and development of mesopelagic fish larvae because of greater water column stability. © 2016 Contreras-Catala et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article, autumn, Benthosema panamense, Diogenichthys laternatus, environmental factor, environmental parameters, fish, geographic distribution, geostrophic kinetic energy, hydrography, larva, nonhuman, population abundance, population dispersion, pop CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA