How a holobiome perspective could promote intensification, biosecurity and eco-efficiency in the shrimp aquaculture industry

Eric Daniel Gutiérrez Pérez RICARDO VAZQUEZ JUAREZ FRANCISCO JAVIER MAGALLON BARAJAS MIGUEL ANGEL MARTINEZ MERCADO GRISEL ALEJANDRA ESCOBAR ZEPEDA Paola Magallón Servín (2022, [Artículo])

"The aquaculture industry faces many challenges regarding the intensification of shrimp rearing systems. One of these challenges is the release of excessive amounts of nitrogen and phosphorus into coastal areas, causing disruption in nutrient cycling and microbial equilibrium, which are important for coastal productivity. Biosecurity within the shrimp rearing systems can also be compromised by disruption to the nutrient fluxes, and as consequence the microbiome of the system. In certain conditions, these changes could lead to the blooming of potentially pathogenic bacteria. These changes in the external microbiome of the system and the constant fluctuations of nutrients can affect the intestinal microbiome of shrimp, which is involved in the growth and development of the host, affecting nutrient absorption, regulating metabolic processes, synthesising vitamins, modulating the immune response and preventing growth of pathogenic bacteria. It has been suggested that specific changes in the intestinal microbiome of Litopenaeus vannamei may be an avenue through which to overcome some of the problems that this industry faces, in terms of health, growth and waste. Recent research, however, has focussed mainly on changes in the intestinal microbiome. Researchers have overlooked the relevance of other aspects of the system, such as the microbiome from the benthic biofilms; zooplankton, plankton and bacterioplankton; and other sources of microorganisms that can directly affect the microbial status of the intestinal and epiphytic communities, especially in rearing systems that are based on intensification and microbial maturation processes, such as a biofloc system. It is therefore necessary to place holobiome studies into context, including the ‘holobiome of the aquaculture system’ (microbiomes that make up the culture system and their interactions) and not only the intestinal microbiome. Thus, we describe factors that affect the shrimp microbiome, the methodology of study, from sampling to bioinformatic workflows, and introduce the concept of the ‘holobiome of the aquaculture system’ and how this enables us to promote the intensification, biosafety and eco-efficiency of shrimp farming. The holobiome perspective implies a greater investment of resources and time for research, but it will accelerate the development of technology that will benefit the development and sustainability of the aquaculture industry."

litopenaeus vannamei, microbiome, intensification, biofloc, holobiome of aquaculture systems CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS PRODUCCIÓN ANIMAL NUTRICIÓN NUTRICIÓN

Perfil epidemiológico y características clínicas de la escleritis en una población del noreste de México

YOLANDA MACIAS RODRIGUEZ (2022, [Artículo])

La epiescleritis (ESC) y escleritis (SC) son enfermedades que se caracterizan por causar inflamación de la capa externa fibrosa del globo ocular, la esclera y epiesclera. Estos padecimientos fueron descritos desde el siglo XIX y el Dr. Watson proporcionó la clasificación clínica que se usa para ordenarlas en sus diferentes subtipos. La etiología de las ESC y SC puede ser idiopática o asociada a causas específicas, como enfermedades autoinmunes, traumatismos, cirugías o infecciones. En diversas poblaciones del mundo se han reportado previamente las características de las ESC y SC. Sin embargo, en la población mexicana solo existen reportes de casos de presentaciones inusuales de ESC y SC y una sola serie reportando las características de la SC. Por lo anterior, se decidió llevar a cabo el presente estudio para expandir el conocimiento acerca de las características de la ESC y SC en la población mexicana. Se realizó un estudio retrospectivo y observacional. El diseño metodológico corresponde a una serie de casos. Se incluyeron pacientes con diagnóstico de ESC y SC, que hubieran firmado el consentimiento informado para participación en investigación clínica. Se analizaron los expedientes físicos y electrónicos de los pacientes que cumplieran con los criterios de inclusión, se tomó la información correspondiente a las variables previamente establecidas y se vació en una hoja de Microsoft Excel y posteriormente se analizaron estadísticamente con el programa SPSS (IBM). Se encontraron y analizaron 55 casos de ESC y 130 casos de SC. En ambos grupos hubo una predominancia del sexo femenino y la edad media fue mayor en pacientes con SC que en ESC (52.26 vs. 44.78 años). El tipo más común de ESC fue la simple y en SC la anterior difusa. La SC posterior fue el subtipo menos frecuente. La etiología más frecuente en ESC y SC fue la idiopática, y la segunda en frecuencia fue la espondiloartropatía asociada al haplotipo HLA B27 y la artritis reumatoide respectivamente. Los motivos de consulta más frecuente fueron ojo rojo solamente y ojo rojo doloroso. Los síntomas más comúnmente descritos por los pacientes con ESC y SC fueron ojo rojo, sensación de cuerpo extraño, dolor, lagrimeo y visión borrosa. Asimismo, los datos clínicos más comúnmente encontrados en pacientes con ESC y SC fueron la ingurgitción de los plexos conjuntivales y epiesclerales, queratopatía punteada superficial y queratitis ulcerativa periférica. La agudeza visual promedio fue buena tanto en ESC como en SC, siendo de 20/25 y 20/30 respectivamente. Para el análisis de tratamiento y recurrencias, se consideraron a los pacientes con un seguimiento mayor a una consulta, consistiendo estos últimos en 35 ESC y 108 SC. En la ESC, 91.4% de los pacientes fueron tratados con un AINE oral, 57.1% con esteroide tópico y 5.7% con AINE tópico. En SC, 76.9% usaron un AINE oral, 62% un esteroide oral, 50% un esteroide tópico y 52.7% un agente imnunosupresor. 29.6% de los pacientes con SC tuvieron una recurrencia. Al comparar la presente serie con las series de ESC y SC reportadas previamente en la literatura se encontró una considerable cantidad de similitudes, como la predominancia del sexo femenino, la media de edad, la incidencia estimada, los síntomas y signos, el tratamiento empleado y la cantidad de recurrencias y su asociación a una edad menor. Debido a todos lo anterior, se concluyó que la presentación de las ESC y SC en la población mexicana es similar a la presentación en otras poblaciones del mundo, previamente reportadas.

Especialidad en Oftalmología

MEDICINA Y CIENCIAS DE LA SALUD CIENCIAS MÉDICAS CIENCIAS CLÍNICAS OFTALMOLOGÍA

Bacterial communities in the rhizosphere at different growth stages of maize cultivated in soil under conventional and conservation agricultural practices

Yendi Navarro-Noya Bram Govaerts Nele Verhulst Luc Dendooven (2022, [Artículo])

Farmers in Mexico till soil intensively, remove crop residues for fodder and grow maize often in monoculture. Conservation agriculture (CA), including minimal tillage, crop residue retention and crop diversification, is proposed as a more sustainable alternative. In this study, we determined the effect of agricultural practices and the developing maize rhizosphere on soil bacterial communities. Bulk and maize (Zea mays L.) rhizosphere soil under conventional practices (CP) and CA were sampled during the vegetative, flowering and grain filling stage, and 16S rRNA metabarcoding was used to assess bacterial diversity and community structure. The functional diversity was inferred from the bacterial taxa using PICRUSt. Conservation agriculture positively affected taxonomic and functional diversity compared to CP. The agricultural practice was the most important factor in defining the structure of bacterial communities, even more so than rhizosphere and plant growth stage. The rhizosphere enriched fast growing copiotrophic bacteria, such as Rhizobiales, Sphingomonadales, Xanthomonadales, and Burkholderiales, while in the bulk soil of CP other copiotrophs were enriched, e.g., Halomonas and Bacillus. The bacterial community in the maize bulk soil resembled each other more than in the rhizosphere of CA and CP. The bacterial community structure, and taxonomic and functional diversity in the maize rhizosphere changed with maize development and the differences between the bulk soil and the rhizosphere were more accentuated when the plant aged. Although agricultural practices did not alter the effect of the rhizosphere on the soil bacterial communities in the flowering and grain filling stage, they did in the vegetative stage.

Community Assembly Functional Diversity Intensive Agricultural Practices Plant Microbiome CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA SUSTAINABLE AGRICULTURE TILLAGE SOIL BACTERIA MAIZE

Sistemas de producción sostenibles y redes de innovación

Jelle Van Loon (2022, [Objeto de congreso])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA PRODUCTION SYSTEMS INNOVATION PRODUCTION SYSTEMS AGRIFOOD SYSTEMS

Last mile seed delivery approaches in Sudan and beyond: an annotated bibliography

Hugo De Groote Paswel Marenya (2023, [Libro])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA SEED SYSTEMS SEED INDUSTRY BIBLIOGRAPHIES

Addressing agricultural labour issues is key to biodiversity-smart farming

Thomas Daum Frédéric Baudron Matin Qaim Ingo Grass (2023, [Artículo])

There is an urgent need for agricultural development strategies that reconcile agricultural production and biodiversity conservation. This is especially true in the Global South where population growth is rapid and much of the world's remaining biodiversity is located. Combining conceptual thoughts with empirical insights from case studies in Indonesia and Ethiopia, we argue that such strategies will have to pay more attention to agricultural labour dynamics. Farmers have a strong motivation to reduce the heavy toil associated with farming by adopting technologies that save labour but can negatively affect biodiversity. Labour constraints can also prevent farmers from adopting technologies that improve biodiversity but increase labour intensity. Without explicitly accounting for labour issues, conservation efforts can hardly be successful. We hence highlight the need for biodiversity-smart agriculture, that is farming practices or systems that reconcile biodiversity with land and labour productivity. Our empirical insights suggest that technological and institutional options to reconcile farmers' socio-economic goals and biodiversity conservation exist but that more needs to be done to implement such options at scale.

Land Sharing Trade-Offs CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA AGRICULTURAL DEVELOPMENT BIODIVERSITY CONSERVATION LABOUR SUSTAINABILITY

Core partners kick-off meeting─Ukama Ustawi (UU): Diversification for Resilient Agrifood systems in East and Southern Africa (ESA)

Evan Girvetz Christian Thierfelder Iddo Dror (2022, [Objeto de congreso])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA AGRICULTURE FOOD SYSTEMS DIVERSIFICATION RESILIENCE

MLN disease diagnostics, MLN disease-free seed production and MLN disease management

Suresh L.M. (2022, [Objeto de congreso])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA DISEASES DISEASE MANAGEMENT SEED PRODUCTION MAIZE NECROSIS YIELD LOSSES ECONOMIC IMPACT SURVEILLANCE SYSTEMS TRAINING

Redesigning crop varieties to win the race between climate change and food security

Kevin Pixley Jill Cairns Santiago Lopez-Ridaura Chris Ojiewo Baloua Nébié Godfrey Asea Biswanath Das Benoit Joseph Batieno Clare Mukankusi Sarah Hearne Kanwarpal Dhugga Sieglinde Snapp Ernesto Adair Zepeda Villarreal (2023, [Artículo])

Crop Breeding Expert Survey CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CLIMATE CHANGE CROPPING SYSTEMS FOOD SECURITY CROPS

Review of Nationally Determined Contributions (NCD) of Kenya from the perspective of food systems

Tek Sapkota (2023, [Documento de trabajo])

Agriculture is one of the fundamental pillars of the 2022–2027 Bottom-up Economic Transformation Plan of the Government of Kenya for tackling complex domestic and global challenges. Kenya's food system is crucial for climate change mitigation and adaptation. Kenya has prioritized aspects of agriculture, food, and land use as critical sectors for reducing emissions towards achieving Vision 2030's transformation to a low-carbon, climate-resilient development pathway. Kenya's updated NDC, as well as supporting mitigation and adaptation technical analysis reports and other policy documents, has identified an ambitious set of agroecological transformative measures to promote climate-smart agriculture, regenerative approaches, and nature-positive solutions. Kenya is committed to implementing and updating its National Climate Change Action Plans (NCCAPs) to present and achieve the greenhouse gas (GHG) emission reduction targets and resilience outcomes that it has identified.

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CLIMATE CHANGE GREENHOUSE GAS EMISSIONS FOOD SYSTEMS LAND USE CHANGE AGRICULTURE POLICIES DATA ANALYSIS FOOD WASTES