The search for cryptic L-Rhamnosyltransferases on the Sporothrix schenckii genome

Hector M. Mora-Montes Karina García-Gutiérrez Laura Cristina García Carnero Nancy Lozoya-Perez Jorge Humberto Ramírez Prado (2022, [Artículo])

The fungal cell wall is an attractive structure to look for new antifungal drug targets and for understanding the host-fungus interaction. Sporothrix schenckii is one of the main causative agents of both human and animal sporotrichosis and currently is the species most studied of the Sporothrix genus. The cell wall of this organism has been previously analyzed, and rhamnoconjugates are signature molecules found on the surface of both mycelia and yeast-like cells. Similar to other reactions where sugars are covalently linked to other sugars, lipids, or proteins, the rhamnosylation process in this organism is expected to involve glycosyltransferases with the ability to transfer rhamnose from a sugar donor to the acceptor molecule, i.e., rhamnosyltransferases. However, no obvious rhamnosyltransferase has thus far been identified within the S. schenckii proteome or genome. Here, using a Hidden Markov Model profile strategy, we found within the S. schenckii genome five putative genes encoding for rhamnosyltransferases. Expression analyses indicated that only two of them, named RHT1 and RHT2, were significantly expressed in yeast-like cells and during interaction with the host. These two genes were heterologously expressed in Escherichia coli, and the purified recombinant proteins showed rhamnosyltransferase activity, dependent on the presence of UDP-rhamnose as a sugar donor. To the best of our knowledge, this is the first report about rhamnosyltransferases in S. schenckii. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.

FUNGAL CELL-WALL GLYCANS RHAMNOCONJUGATES RHAMNOSYLTRANSFERASE BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL

Using an incomplete block design to allocate lines to environments improves sparse genome-based prediction in plant breeding

Osval Antonio Montesinos-Lopez ABELARDO MONTESINOS LOPEZ RICARDO ACOSTA DIAZ Rajeev Varshney Jose Crossa ALISON BENTLEY (2022, [Artículo])

Genomic selection (GS) is a predictive methodology that trains statistical machine-learning models with a reference population that is used to perform genome-enabled predictions of new lines. In plant breeding, it has the potential to increase the speed and reduce the cost of selection. However, to optimize resources, sparse testing methods have been proposed. A common approach is to guarantee a proportion of nonoverlapping and overlapping lines allocated randomly in locations, that is, lines appearing in some locations but not in all. In this study we propose using incomplete block designs (IBD), principally, for the allocation of lines to locations in such a way that not all lines are observed in all locations. We compare this allocation with a random allocation of lines to locations guaranteeing that the lines are allocated to

the same number of locations as under the IBD design. We implemented this benchmarking on several crop data sets under the Bayesian genomic best linear unbiased predictor (GBLUP) model, finding that allocation under the principle of IBD outperformed random allocation by between 1.4% and 26.5% across locations, traits, and data sets in terms of mean square error. Although a wide range of performance improvements were observed, our results provide evidence that using IBD for the allocation of lines to locations can help improve predictive performance compared with random allocation. This has the potential to be applied to large-scale plant breeding programs.

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA Bayes Theorem Genome Inflammatory Bowel Diseases Models, Genetic Plant Breeding

Coinfection and in vitro interaction of Lasiodiplodia pseudotheobromae and Pestalotiopsis mangiferae associated with dieback in branches of mango (Mangifera indica) Manila variety, in Veracruz, Mexico

LILIANA EUNICE SAUCEDO PICAZO Luis Guillermo Hernández Montiel NORMA FLORES ESTEVEZ PATRICIA GEREZ FERNANDEZ ANGEL FERNANDO ARGÜELLO ORTIZ JUAN CARLOS NOA CARRAZANA (2022, [Artículo])

"Dieback disease caused by fungal complexes is a severe problem in mango trees (Mangifera indica). Its main symptoms are branch rot, gummosis, and finally, the tree’s death. In this work, the species of the fungal complex causing mango dieback in the Manila variety in Veracruz, Mexico were identified. The in vitro interaction of two species belonging to the complex was evaluated and the severity of the co-infection in mango branches. Lasiodiplodia pseudotheobromae and Pestalotiopsis mangiferae were identified as causal agents of mango dieback in the producing area of Veracruz. In coinfected mango branches, greater severity of necrosis was observed than in individual infections. Liquid culture filtrates applied in co-cultures showed different results for each species of phytopathogen. The P. mangiferae filtrate had no significant antagonistic effects on the growth of L. pseudotheobromae (inhibition of 2.68%), while the L. pseudotheobromae filtrate inhibited 41.38% of P. mangiferae. The results show that multiple infections in mango trees increase the damage caused by dieback, which could directly impact the development of control strategies."

gummosis, virulence, interaction, fungal complex CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS FITOPATOLOGÍA FITOPATOLOGÍA FITOPATOLOGÍA

Las patologías de los recubrimientos en muros y su repercusión en la salud respiratoria de los usuarios

Rosario Tovar (2023, [Tesis de doctorado])

251 páginas. Doctorado en Diseño Bioclimático.

El nivel de calidad del aire interior (CAI) tiene incidencia directa en la salud humana, por eso, es objeto de estudio del diseño bioclimático, toda vez que éste promueve el aprovechamiento de los factores ambientales para la creación y acondicionamiento de espacios en los que los usuarios experimenten confort y bienestar. Además, de impulsar la construcción con sentido común, en donde prevalezca el uso racional de los recursos y una baja dependencia energética. En la presente tesis se pudieron identificar las propiedades de los materiales más comunes que conforman los recubrimientos de muros (cal, cemento, mortero de cemento y yeso) para reconocer los que mejor se adaptan al clima en la Cd. de México, mismos que según se pudo constatar, contribuyen en el control de algunos factores de riesgo (físico: humedad, químico: tóxicos y biológico: microbios) relacionados con una baja calidad del aire al interior de las viviendas. Tal función mitiga o reduce la aparición de algunos de los padecimientos respiratorios más frecuentes en los usuarios como: alergias, asma, rinitis, gripe y sinusitis. Los análisis a los que fueron sometidos los recubrimientos de cuatro materiales ligantes, permitieron evaluar su desempeño ante factores ambientales semi-controlados (temperatura, humedad relativa y concentración de dióxido de carbono) inherentes al funcionamiento del propio espacio interior y al lugar de emplazamiento del mismo. Obviamente, todos los recubrimientos reaccionaron de forma distinta y acorde con las propiedades físicas y químicas de los materiales presentes en cada uno de ellos. Siendo las variaciones más representativas y satisfactorias, las relacionadas con la permeabilidad y el efecto biocida de los recubrimientos hechos con mezcla de cal. Las patologías que mostraron algunos recubrimientos a lo largo del periodo de monitoreo, debido a la insuficiente gestión de la humedad, al alto desarrollo microbiano y a la naturaleza química del material ligante, fueron criptoeflorescencias, moho, bacterias y desprendimiento/diseminación de partículas; mismas que se consideraron definitorias para establecer que al igual que los seres vivos, los materiales de construcción necesitan rangos higrotérmicos específicos, que permitan su óptimo estado de operación. En apego a lo anteriormente citado, es que se considera conveniente concientizar a la población en temas tan importantes para el bienestar social, como la selección de materiales y -consecuente- conservación de los recubrimientos de muros, no sólo para disminuir los costos de ejecución y mantenimiento, sino para aprovechar sus propiedades, ya que tienen una incidencia directa en lo relacionado con el control de las condiciones ambientales básicas, la regulación de la calidad del aire interior y por ende, en la salud de los usuarios. Dicha labor puede iniciar en la etapa formativa de los profesionales de la construcción, con la intención de normalizar el estudio o correcta selección de los sistemas constructivos en función del clima, pero también identificando la función de cada espacio; para garantizar así, que las propuestas de diseño responderán -satisfactoriamente- a los requerimientos de regulación de la humedad, mediante su absorción, transpiración y/o evaporación.

The level of indoor air quality (IAQ) has a direct incidence on the human health, therefore, is the object of study of bioclimatic design, since it promotes the harnessing environmental factors for the creation and conditioning of spaces in which users experience comfort and well-being. In addition, to encourage construction with common sense, where the rational use of resources and low energy dependence prevail. In this thesis it has been identified the properties of the materials that make up the most common wall coverings (hydrated lime, cement, cement mortar and gypsum) for recognizing those that best adapt to the weather in Mexico City, as it could be verified, they contribute to the control of some risk factors (physical:moisture, chemical:toxics and biological:microbes) related with a low indoor air quality at dwellings. This function mitigates or reduces the appearance of some of the most frequent respiratory ailments in users such as: allergies, asthma, rhinitis, flu and sinusitis. The analyses to which the coatings of four binding materials were subjected, allowed to evaluate their performance in the face of semi-controlled environmental factors (temperature, relative humidity, and carbon dioxide concentration) inherent to the operation of the interior space itself and the place of its location. Obviously, all the coatings reacted differently and according with the physical and chemical properties of the materials in each of them. Being the most representative and satisfactory variations, those related to the permeability and biocidal effect of coatings made with hydrated lime mixture. The pathologies that some coatings showed throughout the monitoring period, due to insufficient moisture management, the high microbial development, and the chemical nature of the binding material, were cryptoefflorescences, mold, bacteria and particle shedding/dissemination; they were defining to establish that in similar way to living beings, building materials need specific hygrothermal ranges, to let them works in an optimal state. According with the above, it is considered convenient to raise awareness among the population on issues as important for social welfare, such as the selection of materials and -consequently- conservation of wall coverings, not only to reduce the costs of execution and maintenance, but to take advantage of their properties, since they have a direct incidence in all related with the control of basic environmental conditions, the regulation of indoor air quality and therefore, in users’ health. This work can begin in the formative stage of construction professionals, with the intention of standardizing the study or correct selection of construction systems depending on the weather, but also identifying the function of each space; to guarantee that the design proposals will respond -satisfactorily- to the requirements of humidity regulation, through its absorption, transpiration and/or evaporation.

Muro, recubrimientos, patologías, salud. Wall, coating, pathologies, health. Indoor air pollution--Health aspects. Architecture--Health aspects. Interior walls. Protective coatings. Lime as a disinfectant. Building materials. Communicable diseases--Transmission--Prevention. Contaminación del aire interior. Muros interiores. Revestimientos. Cal como desinfectante. RA577.5 HUMANIDADES Y CIENCIAS DE LA CONDUCTA CIENCIAS DE LAS ARTES Y LAS LETRAS ARQUITECTURA DISEÑO ARQUITECTÓNICO

Coronin is a component of the endocytic collar of hyphae of neurospora crassa and is necessary for normal growth and morphogenesis

RAMON OSVALDO ECHAURI ESPINOSA (2012, [Artículo])

Coronin plays a major role in the organization and dynamics of actin in yeast. To investigate the role of coronin in a filamentous fungus (Neurospora crassa), we examined its subcellular localization using fluorescent proteins and the phenotypic consequences of coronin gene (crn-1) deletion in hyphal morphogenesis, Spitzenkörper behavior and endocytosis. Coronin-GFP was localized in patches, forming a subapical collar near the hyphal apex; significantly, it was absent from the apex. The subapical patches of coronin colocalized with fimbrin, Arp2/3 complex, and actin, altogether comprising the endocytic collar. Deletion of crn-1 resulted in reduced hyphal growth rates, distorted hyphal morphology, uneven wall thickness, and delayed establishment of polarity during germination; it also affected growth directionality and increased branching. The Spitzenkörper of Δcrn-1 mutant was unstable; it appeared and disappeared intermittently giving rise to periods of hyphoid-like and isotropic growth respectively. Uptake of FM4-64 in Δcrn-1 mutant indicated a partial disruption in endocytosis. These observations underscore coronin as an important component of F-actin remodeling in N. crassa. Although coronin is not essential in this fungus, its deletion influenced negatively the operation of the actin cytoskeleton involved in the orderly deployment of the apical growth apparatus, thus preventing normal hyphal growth and morphogenesis. © 2012 Echauri-Espinosa et al.

actin related protein 2-3 complex, F actin, fimbrin protein, fluorescent dye, fungal protein, fungal protein coronin, green fluorescent protein, unclassified drug, actin binding protein, coronin proteins, fungal protein, article, cell polarity, contr BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA MICROBIOLOGÍA MICROBIOLOGÍA

Comparative live-cell imaging analyses of SPA-2, BUD-6 and BNI-1 in Neurospora crassa reveal novel features of the filamentous fungal polarisome

Alexander Lichius (2012, [Artículo])

A key multiprotein complex involved in regulating the actin cytoskeleton and secretory machinery required for polarized growth in fungi, is the polarisome. Recognized core constituents in budding yeast are the proteins Spa2, Pea2, Aip3/Bud6, and the key effector Bni1. Multicellular fungi display a more complex polarized morphogenesis than yeasts, suggesting that the filamentous fungal polarisome might fulfill additional functions. In this study, we compared the subcellular organization and dynamics of the putative polarisome components BUD-6 and BNI-1 with those of the bona fide polarisome marker SPA-2 at various developmental stages of Neurospora crassa. All three proteins exhibited a yeast-like polarisome configuration during polarized germ tube growth, cell fusion, septal pore plugging and tip repolarization. However, the localization patterns of all three proteins showed spatiotemporally distinct characteristics during the establishment of new polar axes, septum formation and cytokinesis, and maintained hyphal tip growth. Most notably, in vegetative hyphal tips BUD-6 accumulated as a subapical cloud excluded from the Spitzenkörper (Spk), whereas BNI-1 and SPA-2 partially colocalized with the Spk and the tip apex. Novel roles during septal plugging and cytokinesis, connected to the reinitiation of tip growth upon physical injury and conidial maturation, were identified for BUD-6 and BNI-1, respectively. Phenotypic analyses of gene deletion mutants revealed additional functions for BUD-6 and BNI-1 in cell fusion regulation, and the maintenance of Spk integrity. Considered together, our findings reveal novel polarisome-independent functions of BUD-6 and BNI-1 in Neurospora, but also suggest that all three proteins cooperate at plugged septal pores, and their complex arrangement within the apical dome of mature hypha might represent a novel aspect of filamentous fungal polarisome architecture. © 2012 Lichius et al.

fungal protein, protein BNI 1, protein BUD 6, protein SPA 2, protein Spk, unclassified drug, actin binding protein, cytoskeleton protein, fungal protein, article, cell fusion, cellular distribution, comparative study, conidium, controlled study, cyto BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA MICROBIOLOGÍA MICROBIOLOGÍA

Whole-genome comparison between reference sequences and oyster Vibrio vulnificus C-genotype strains

CARLOS ABRAHAM GUERRERO RUIZ (2019, [Artículo])

Whole-genome sequences of Vibrio vulnificus clinical genotype (C-genotype) from the CICESE Culture Collection, isolated from oysters, were compared with reference sequences of CMCP6 and YJ016 V. vulnificus C-genotype strains of clinical origin. The RAST web server estimated the whole genome to be ~4.8 Mb in CICESE strain 316 and ~4.7 Mb in CICESE strain 325. No plasmids were detected in the CICESE strains. Based on a phylogenetic tree that was constructed with the whole-genome results, we observed high similarity between the reference sequences and oyster C-genotype isolates and a sharp contrast with environmental genotype (E-genotype) reference sequences, indicating that the differences between the C- and E-genotypes do not necessarily correspond to their isolation origin. The CICESE strains share 3488 genes (63.2%) with the YJ016 strain and 3500 genes (63.9%) with the CMCP6 strain. A total of 237 pathogenicity associated genes were selected from reference clinical strains, where—92 genes were from CMCP6, 126 genes from YJ016, and 19 from MO6-24/ O; the presence or absence of these genes was recorded for the CICESE strains. Of the 92 genes that were selected for CMCP6, 67 were present in both CICESE strains, as were as 86 of the 126 YJ016 genes and 13 of the 19 MO6-24/O genes. The detection of elements that are related to virulence in CICESE strains—such as the RTX gene cluster, vvhA and vvpE, the type IV pili cluster, the XII genomic island, and the viuB genes, suggests that environmental isolates with the C-genotype, have significant potential for infection. © 2019 Guerrero et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Article, bacterial gene, bacterial strain, bacterial virulence, comparative study, controlled study, gene cluster, gene identification, genomic island, genotype, nonhuman, phylogenetic tree, sequence analysis, strain identification, Vibrio vulnificus BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA

Functional characterization and cellular dynamics of the CDC-42 - RAC - CDC-24 module in neurospora crassa

CYNTHIA LIZZETH ARAUJO PALOMARES (2011, [Artículo])

Rho-type GTPases are key regulators that control eukaryotic cell polarity, but their role in fungal morphogenesis is only beginning to emerge. In this study, we investigate the role of the CDC-42 - RAC - CDC-24 module in Neurospora crassa. rac and cdc-42 deletion mutants are viable, but generate highly compact colonies with severe morphological defects. Double mutants carrying conditional and loss of function alleles of rac and cdc-42 are lethal, indicating that both GTPases share at least one common essential function. The defects of the GTPase mutants are phenocopied by deletion and conditional alleles of the guanine exchange factor (GEF) cdc-24, and in vitro GDP-GTP exchange assays identify CDC-24 as specific GEF for both CDC-42 and RAC. In vivo confocal microscopy shows that this module is organized as membrane-associated cap that covers the hyphal apex. However, the specific localization patterns of the three proteins are distinct, indicating different functions of RAC and CDC-42 within the hyphal tip. CDC-42 localized as confined apical membrane-associated crescent, while RAC labeled a membrane-associated ring excluding the region labeled by CDC42. The GEF CDC-24 occupied a strategic position, localizing as broad apical membrane-associated crescent and in the apical cytosol excluding the Spitzenkörper. RAC and CDC-42 also display distinct localization patterns during branch initiation and germ tube formation, with CDC-42 accumulating at the plasma membrane before RAC. Together with the distinct cellular defects of rac and cdc-42 mutants, these localizations suggest that CDC-42 is more important for polarity establishment, while the primary function of RAC may be maintaining polarity. In summary, this study identifies CDC-24 as essential regulator for RAC and CDC-42 that have common and distinct functions during polarity establishment and maintenance of cell polarity in N. crassa. © 2011 Araujo-Palomares et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

CDC24 protein, guanine nucleotide exchange factor, protein Cdc42, Rac protein, unclassified drug, cell cycle protein, fungal protein, membrane protein, multiprotein complex, protein Cdc42, Rac protein, allele, apical membrane, article, assay, cell me BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA MICROBIOLOGÍA MICROBIOLOGÍA