Evaluación de indicadores de calidad y funcionalidad en islas de recursos, de mezquite (Prosopis articulata) y cardón (Pachycereus pringlei) en una zona restaurada de Baja California Sur

Geovanna Zárate Camargo (2024, [Tesis de maestría])

"Las temperaturas extremas, radiación solar intensa, vientos fuertes, humedad limitada y la baja fertilidad de los suelos desérticos dificultan la recuperación de zonas degradadas en zonas áridas. Uno de los fenómenos naturales más importantes de revegetación en zonas áridas son las islas de recursos, conformadas por algunos tipos de plantas que actúan como nodrizas, las cuales, bajo su dosel, desarrollan un microhábitat favorable para el establecimiento de otras especies que trabajan en conjunto con una larga comunidad de microorganismos que se encuentran en el suelo. Entre las plantas nodriza que se observan con más frecuencia en el Desierto de Sonora, se encuentran las especies del género Prosopis. Las islas de recursos conformadas por mezquites han demostrado tener un efecto positivo como planta nodriza en zonas áridas. Las contribuciones del mezquite son el aumento del contenido de N en el suelo, temperaturas moderadas en el suelo y la superficie, altos niveles de humedad, mayor actividad microbiana, entre otros aspectos que hacen posible los efectos de las islas de recursos. En este estudio se evaluaron diferentes indicadores de calidad de suelo en islas de recursos establecidas hace 19 años, como parte de un proyecto de revegetación de suelos degradados, distintivo del Desierto Sonorense. El objetivo de este estudio fue determinar si existe un gradiente con respecto a la distancia y profundidad, en la actividad microbiana y enzimática presente en suelos de islas de recursos, resultado de la interacción de mezquite amargo (Prosopis articulata), como planta nodriza y cardón (Pachycereus pringlei), como planta objetivo. Los resultados demostraron que existe un aumento la actividad enzimática y carbono asociado a biomasa microbiana del suelo perteneciente a estas islas, con mayores resultados en zonas próximas a la planta nodriza que en zonas sin su influencia, también se encontró un aumento en la capa superficial del suelo mostrando mayores valores en los indicadores de calidad y funcionalidad bajo el dosel de las islas de recursos. Lo anterior sugiere que el uso de estas islas de recursos es una potencial alternativa en la restauración de suelos degradados, favoreciendo el ciclaje de nutrientes en suelos degradados."

"At desert, the high temperatures, intense solar radiation, strong winds, limited water, and low fertility, determine how challenging will be the recovery of degraded soils in arid lands. One of the most important natural phenomena of revegetation in arid lands are the “resource islands”, that consist of some trees or bushes acting as nurse plants, which under their canopy, develop a beneficial microhabitat for the establishment of other plant species the work with an extensive community of microorganisms found in the soil. Among the most common nurse plants observed in the Sonoran Desert, is the genus Prosopis. The resource islands formed with mesquite have shown positive effects as nurse plant in arid lands. The principal contributions of mesquite are the increase of N in the soil, moderate temperatures on soil and topsoil, high moisture levels, increased microbial activity, among other aspects that make possible the effect of resource islands. In this study, different quality indicators were evaluated in resource islands established 19 years ago, as part of a project for revegetation in degraded soils, distinctive from the Sonoran Desert. The aim of this research was to explore whether there is a correlation between distance, depth, microbial activity, and enzymatic activity in the soil surrounding resource islands formed by the interaction between mesquite amargo (Prosopis articulata) as the nurse plant and cardon (Pachycereus pringlei) as the objective plant. The results demonstrated that there is an increase in the enzymatic activity and microbial biomass carbon from the soil under the canopy of the resource islands, with higher results in zones near the nurse plant than zones without its influence, furthermore, there was found an increase in the topsoil showing higher values in the soil quality and functionality indicators under the canopy of the resource islands. The above indicates that the use of these resource islands is a potential alternative in the degraded soil restoration, supporting the nutrient cycling in degraded soils."

suelo, ecología, revegetación, actividad enzimática, ciclaje de nutrientes soil, ecology, revegetation, enzymatic activity, nutrient cycling CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS AGRONOMÍA FERTILIDAD DEL SUELO FERTILIDAD DEL SUELO

Procesamiento emocional ante estímulos música-color y su respuesta electrofisiológica en personas con depresión

PABLO VALDÉS ALEMÁN (2024, [Tesis de maestría])

Dado el fenómeno del vínculo emocional que existe entre música y color, este

proyecto exploró los posibles efectos terapéuticos en personas con depresión, al

presentarles estímulos combinados de música con color que, en conjunto, evocan

emociones positivas y placenteras. El proyecto se dividió en tres partes, con el fin

de subsanar los vacíos en la literatura. Primero se evaluaron los 37 colores del

Berkeley Color Project como estímulos capaces de evocar emociones y placer,

distinguibles mediante los modelos de asimetría frontal de alfa (FAA) y de theta con

electroencefalografía (EEG). El segundo estudio exploró los posibles efectos

sinérgicos al combinar música y color de emoción congruente –i.e., misma

emoción–, mediante respuestas subjetivas y EEG. Por último, se probó el impacto

de estímulos música-color positivos y placenteros sobre el estado de ánimo de

personas con depresión, a partir de sus respuestas subjetivas y EEG. Se encontró

que los colores brillantes, alegres y placenteros se asocian con una mayor

activación –supresión de alfa– frontal izquierda, de acuerdo con el modelo de FAA.

En lugar de un efecto sinérgico, los hallazgos mostraron un predominio emocional

hacia la música, reafirmando su poder emocional por encima del color. Por último,

los resultados del tercer estudio demostraron una mejora en el estado de ánimo en

las personas con sintomatología depresiva tras la estimulación. Estos resultados

podrían informar a profesionales de la salud mental sobre nuevos métodos

terapéuticos para ayudar a pacientes con depresión, al conjuntar la musicoterapia

con la cromoterapia.

Given the phenomenon of the emotional link between music and color, this project

explored the possible therapeutic effects on people with depression by presenting

them with combined music-color stimuli that collectively evoke positive and pleasant

emotions. The project was divided into three parts to address gaps in the literature.

Firstly, the 37 colors from the Berkeley Color Project were evaluated as stimuli

capable of evoking emotions and pleasure, distinguishable through the frontal alpha

(FAA) and theta asymmetry models using electroencephalography (EEG). The

second study explored the potential synergic effects by combining music and color

of congruent emotion –i.e., the same emotion– using subjective responses and EEG.

Lastly, the impact of positive and pleasant music-color stimuli on the mood of

individuals with depression was tested based on their subjective responses and

EEG. It was found that bright, joyful, and pleasant colors are associated with

increased activation –alpha suppression– in the left frontal region of the scalp,

according to the FAA model. Instead of a synergic effect, the results showed an

emotional predominance towards music, reaffirming its emotional power over color.

Finally, the results of the third study demonstrated an improvement in the mood of

individuals with depressive symptoms following the stimulation. These findings could

inform mental health professionals about new therapeutic methods to assist patients

with depression by combining music therapy with chromotherapy.

MEDICINA Y CIENCIAS DE LA SALUD CIENCIAS MÉDICAS música, color y emoción; patrones de actividad EEG; Berkeley Color Project; musico-cromoterapia; depresión. music, color, and emotion; EEG activity patterns; Berkeley Color Project; music-chromotherapy; depression.

Hyperiid amphipods from the Gulf of Ulloa and offshore region, Baja California: The possible role of the gelatinous zooplankton as a transport vector into the coastal shelf waters

Bertha Lavaniegos (2020, [Artículo])

Hyperiid amphipod species from the Gulf of Ulloa, Baja California, and the adjacent region (from the shelf break to 200 km offshore) were analyzed to evaluate diversity and abundances. This productive area supports small-scale commercial fisheries, including sand bass (Paralabrax nebulifer), California spiny lobster (Panulirus interruptus), abalones, clams, and others. Strong coastal upwelling events were observed during summer seasons of the period 2002-2008 between Punta Eugenia and Punta Abreojos. The upwelling plumes at Punta Abreojos are transported southward in slope waters bordering the coastal shelf of the Gulf of Ulloa, contributing to the separation of coastal and oceanic regions, and explain differences in amphipod diversity and abundances between both regions. In the offshore region, the most abundant species were Vibilia armata, Lestrigonus schizogeneios, Primno brevidens, and Eupronoe minuta, similar to previous findings in northern regions of Baja California and southern California. However, abundances of these species were lower (10-30 individuals/1000 m3), only reaching 20-50% of abundance levels reported off northern Baja California. In the coastal shelf of the Gulf of Ulloa, amphipods were virtually absent during 2002, 2003 and 2006. However, during 2004 and 2005, abundances of P. brevidens increased (54 and 20 ind/1000 m3, respectively). Moreover, during the late summer of 2007, abundances of L. schizogeneios, P. brevidens, Lycaea nasuta, Lycaea pulex, and Simorhynchotus antennarius increased considerably (261, 39, 31, 68, 416 ind/1000 m3, respectively), indicating occasional utilization of the coastal shelf by pelagic amphipods. Changes in gelatinous populations (medusae, siphonophores, ctenophores, doliolids, and salps) paralleled changes in hyperiid populations, with highest abundances in 2005-2008 in the coastal shelf. Significant correlations of 17 amphipod species with gelatinous taxa, which are often used as host organisms by hyperiid amphipods, suggest that gelatinous presence enhanced hyperiid abundance and promoted the progression of hyperiid amphipods onto the coastal shelf during parts of the 2002-2008 period. © 2020 Bertha E. Lavaniegos. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

abalone, Amphipoda, article, Baja California, clam, clinical article, Ctenophora, Eugenia, female, fishery, human, human experiment, male, medusa, nonhuman, Panulirus interruptus, plume, summer, zooplankton, Amphipoda, animal, California, ecosystem, CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Assessing the Spatiotemporal Relationship between Coastal Habitats and Fish Assemblages at Two Neotropical Estuaries of the Mexican Pacific

VICTOR MANUEL MURO TORRES FELIPE AMEZCUA MARTINEZ Gerogina Ramírez Ortiz FRANCISCO JAVIER FLORES DE SANTIAGO Felipe Amezcua Linares Yareli Hernández Álvarez (2022, [Artículo])

"Differences in fish assemblages’ structures and their relations with environmental variables (due to the variations in sampled seasons, habitats, and zones) were analyzed in two adjacent estuaries on the north Pacific coast of Mexico. Environmental variables and fish catches were registered monthly between August 2018 and October 2020. Multivariate analyses were conducted to define habitats and zones based on their environmental characteristics, and the effect of this variability on fish assemblages’ composition, biomass, and diversity (α and β) was evaluated. A total of 12,008 fish individuals of 143 species were collected using different fishing nets. Multivariate analyses indicated that fish assemblages’ structures were different between zones due to the presence, height, and coverage of distinct mangrove species. Additionally, depth and salinity showed effects on fish assemblages’ diversity (α and β-nestedness), which presented higher values in the ocean and remained similar in the rest of the analyzed zones and habitats. These results and the differences in species replacement (β-turnover) indicate the singularity of fish assemblages at estuaries (even in areas close to the ocean) and the necessity to establish local management strategies for these ecosystems."

mangrove forests, marine protected areas, alpha diversity, beta diversity, multivariate analyses CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS PECES Y FAUNA SILVESTRE DINÁMICA DE LAS POBLACIONES DINÁMICA DE LAS POBLACIONES

A Comparison of Multi-Label Text Classification Models in Research Articles Labeled With Sustainable Development Goals

Roberto Carlos Morales-Hernández Joaquín Gutiérrez Jaguey David Becerra-Alonso (2022, [Artículo])

"The classification of scientific articles aligned to Sustainable Development Goals is crucial for research institutions and universities when assessing their influence in these areas. Machine learning enables the implementation of massive text data classification tasks. The objective of this study is to apply Natural Language Processing techniques to articles from peer-reviewed journals to facilitate their classification according to the 17 Sustainable Development Goals of the 2030 Agenda. This article compares the performance of multi-label text classification models based on a proposed framework with datasets of different characteristics. The results show that the combination of Label Powerset (a transformation method) with Support Vector Machine (a classification algorithm) can achieve an accuracy of up to 87% for an imbalanced dataset, 83% for a dataset with the same number of instances per label, and even 91% for a multiclass dataset."

Classification algorithm, multi-label text classification, problem transformation method, scientific articles, sustainable development goals, text classification INGENIERÍA Y TECNOLOGÍA CIENCIAS TECNOLÓGICAS TECNOLOGÍA DE LOS ORDENADORES LENGUAJES ALGORÍTMICOS LENGUAJES ALGORÍTMICOS

Rapid effects of marine reserves via larval dispersal

Richard Cudney Bueno (2009, [Artículo])

Marine reserves have been advocated worldwide as conservation and fishery management tools. It is argued that they can protect ecosystems and also benefit fisheries via density-dependent spillover of adults and enhanced larval dispersal into fishing areas. However, while evidence has shown that marine reserves can meet conservation targets, their effects on fisheries are less understood. In particular, the basic question of if and over what temporal and spatial scales reserves can benefit fished populations via larval dispersal remains unanswered. We tested predictions of a larval transport model for a marine reserve network in the Gulf of California, Mexico, via field oceanography and repeated density counts of recently settled juvenile commercial mollusks before and after reserve establishment. We show that local retention of larvae within a reserve network can take place with enhanced, but spatially-explicit, recruitment to local fisheries. Enhancement occurred rapidly (2 yrs), with up to a three-fold increase in density of juveniles found in fished areas at the downstream edge of the reserve network, but other fishing areas within the network were unaffected. These findings were consistent with our model predictions. Our findings underscore the potential benefits of protecting larval sources and show that enhancement in recruitment can be manifested rapidly. However, benefits can be markedly variable within a local seascape. Hence, effects of marine reserve networks, positive or negative, may be overlooked when only focusing on overall responses and not considering finer spatially-explicit responses within a reserve network and its adjacent fishing grounds. Our results therefore call for future research on marine reserves that addresses this variability in order to help frame appropriate scenarios for the spatial management scales of interest. © 2009 Cudney-Bueno et al.

article, environmental monitoring, fishery, larva, marine environment, marine species, Mexico, mollusc, nonhuman, oceanography, prediction, animal, biology, environmental protection, food industry, geography, growth, development and aging, larva, met CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Integrative taxonomy and molecular phylogeny of genus Aplysina (Demospongiae: Verongida) from Mexican Pacific

José Antonio Cruz-Barraza (2012, [Artículo])

Integrative taxonomy provides a major approximation to species delimitation based on integration of different perspectives (e.g. morphology, biochemistry and DNA sequences). The aim of this study was to assess the relationships and boundaries among Eastern Pacific Aplysina species using morphological, biochemical and molecular data. For this, a collection of sponges of the genus Aplysina from the Mexican Pacific was studied on the basis of their morphological, chemical (chitin composition), and molecular markers (mitochondrial COI and nuclear ribosomal rDNA: ITS1-5.8-ITS2). Three morphological species were identified, two of which are new to science. A. clathrata sp. nov. is a yellow to yellow-reddish or -brownish sponge, characterized by external clathrate-like morphology; A. revillagigedi sp. nov. is a lemon yellow to green, cushion-shaped sometimes lobate sponge, characterized by conspicuous oscules, which are slightly elevated and usually linearly distributed on rims; and A. gerardogreeni a known species distributed along the Mexican Pacific coast. Chitin was identified as the main structural component within skeletons of the three species using FTIR, confirming that it is shared among Verongida sponges. Morphological differences were confirmed by DNA sequences from nuclear ITS1-5.8-ITS2. Mitochondrial COI sequences showed extremely low but diagnostic variability for Aplysina revillagigedi sp. nov., thus our results corroborate that COI has limited power for DNA-barcoding of sponges and should be complemented with other markers (e.g. rDNA). Phylogenetic analyses of Aplysina sequences from the Eastern Pacific and Caribbean, resolved two allopatric and reciprocally monophyletic groups for each region. Eastern Pacific species were grouped in general accordance with the taxonomic hypothesis based on morphological characters. An identification key of Eastern Pacific Aplysina species is presented. Our results constitute one of the first approximations to integrative taxonomy, phylogeny and evolutionary biogeography of Eastern Pacific marine sponges; an approach that will significantly contribute to our better understanding of their diversity and evolutionary history. © 2012 Cruz et al.

chitin, genomic DNA, mitochondrial DNA, molecular marker, ribosome DNA, allopatry, Aplysina clatharata, Aplysina gerardogreeni, Aplysina revillagigedi, article, DNA barcoding, DNA sequence, genetic polymorphism, genetic variability, infrared spectros CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

A simple extension to the CMASA method for the prediction of catalytic residues in the presence of single point mutations

David Israel Flores Granados (2014, [Artículo])

The automatic identification of catalytic residues still remains an important challenge in structural bioinformatics. Sequence-based methods are good alternatives when the query shares a high percentage of identity with a well-annotated enzyme. However, when the homology is not apparent, which occurs with many structures from the structural genome initiative, structural information should be exploited. A local structural comparison is preferred to a global structural comparison when predicting functional residues. CMASA is a recently proposed method for predicting catalytic residues based on a local structure comparison. The method achieves high accuracy and a high value for the Matthews correlation coefficient. However, point substitutions or a lack of relevant data strongly affect the performance of the method. In the present study, we propose a simple extension to the CMASA method to overcome this difficulty. Extensive computational experiments are shown as proof of concept instances, as well as for a few real cases. The results show that the extension performs well when the catalytic site contains mutated residues or when some residues are missing. The proposed modification could correctly predict the catalytic residues of a mutant thymidylate synthase, 1EVF. It also successfully predicted the catalytic residues for 3HRC despite the lack of information for a relevant side chain atom in the PDB file. © 2014 Flores et al.

1UU9 protein, 3HRC protein, protein, thymidylate synthase, unclassified drug, protein kinase, thymidylate synthase, accuracy, algorithm, Article, CMASA, CMASA Substitution Matrix, Contact Matrix Average Deviation, controlled study, correlation coeffi CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA MATEMÁTICAS ANÁLISIS NUMÉRICO ANÁLISIS NUMÉRICO

Movements of scalloped hammerhead sharks (Sphyrna lewini) at Cocos Island, Costa Rica and between oceanic islands in the Eastern Tropical Pacific

Elena Nalesso (2019, [Artículo])

Many species of sharks form aggregations around oceanic islands, yet their levels of residency and their site specificity around these islands may vary. In some cases, the waters around oceanic islands have been designated as marine protected areas, yet the conservation value for threatened shark species will depend greatly on how much time they spend within these protected waters. Eighty-four scalloped hammerhead sharks (Sphyrna lewini Griffith & Smith), were tagged with acoustic transmitters at Cocos Island between 2005–2013. The average residence index, expressed as a proportion of days present in our receiver array at the island over the entire monitoring period, was 0.52±0.31, implying that overall the sharks are strongly associated with the island. Residency was significantly greater at Alcyone, a shallow seamount located 3.6 km offshore from the main island, than at the other sites. Timing of presence at the receiver locations was mostly during daytime hours. Although only a single individual from Cocos was detected on a region-wide array, nine hammerheads tagged at Galapagos and Malpelo travelled to Cocos. The hammerheads tagged at Cocos were more resident than those visiting from elsewhere, suggesting that the Galapagos and Malpelo populations may use Cocos as a navigational waypoint or stopover during seasonal migrations to the coastal Central and South America. Our study demonstrates the importance of oceanic islands for this species, and shows that they may form a network of hotspots in the Eastern Tropical Pacific. © 2019 Nalesso et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

article, Cocos Island, human, monitoring, nonhuman, resident, shark, South America, animal, Costa Rica, environmental protection, island (geological), movement (physiology), physiology, season, shark, Animals, Conservation of Natural Resources, Costa CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Climate change and the northern elephant seal (Mirounga angustirostris) population in Baja California, Mexico

M. Concepción García-Aguilar (2018, [Artículo])

The Earth0s climate is warming, especially in the mid- and high latitudes of the Northern Hemisphere. The northern elephant seal (Mirounga angustirostris) breeds and haul-outs on islands and the mainland of Baja California, Mexico, and California, U.S.A. At the beginning of the 21st century, numbers of elephant seals in California are increasing, but the status of Baja California populations is unknown, and some data suggest they may be decreasing. We hypothesize that the elephant seal population of Baja California is experiencing a decline because the animals are not migrating as far south due to warming sea and air temperatures. Here we assessed population trends of the Baja California population, and climate change in the region. The numbers of northern elephant seals in Baja California colonies have been decreasing since the 1990s, and both the surface waters off Baja California and the local air temperatures have warmed during the last three decades. We propose that declining population sizes may be attributable to decreased migration towards the southern portions of the range in response to the observed temperature increases. Further research is needed to confirm our hypothesis; however, if true, it would imply that elephant seal colonies of Baja California and California are not demographically isolated which would pose challenges to environmental and management policies between Mexico and the United States. © 2018 García-Aguilar et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

air temperature, article, Baja California, climate change, human, Mirounga angustirostris, nonhuman, population size, warming, animal, ecosystem, environmental protection, Mexico, Phocidae, population density, population migration, temperature, Anima CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA