Exploring GWAS and genomic prediction to improve Septoria tritici blotch resistance in wheat

Admas Alemu Abebe Pawan Singh Aakash Chawade (2023, [Artículo])

Septoria Tritici Blotch Wheat Breeding Genomic Prediction CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA GENOME-WIDE ASSOCIATION STUDIES MYCOSPHAERELLA GRAMINICOLA DISEASE RESISTANCE WHEAT PLANT GROWTH

Genome-wide association analyses of agronomic traits and Striga hermonthica resistance in pearl millet

Hussein Shimelis Chris Ojiewo Abhishek Rathore (2023, [Artículo])

Pearl millet (Pennisetum glaucum [L.] R. Br.) is a nutrient-dense, relatively drought-tolerant cereal crop cultivated in dry regions worldwide. The crop is under-researched, and its grain yield is low (< 0.8 tons ha−1) and stagnant in the major production regions, including Burkina Faso. The low productivity of pearl millet is mainly attributable to a lack of improved varieties, Striga hermonthica [Sh] infestation, downy mildew infection, and recurrent heat and drought stress. Developing high-yielding and Striga-resistant pearl millet varieties that satisfy the farmers’ and market needs requires the identification of yield-promoting genes linked to economic traits to facilitate marker-assisted selection and gene pyramiding. The objective of this study was to undertake genome-wide association analyses of agronomic traits and Sh resistance among 150 pearl millet genotypes to identify genetic markers for marker-assisted breeding and trait introgression. The pearl millet genotypes were phenotyped in Sh hotspot fields and screen house conditions. Twenty-nine million single nucleotide polymorphisms (SNPs) initially generated from 345 pearl millet genotypes were filtered, and 256 K SNPs were selected and used in the present study. Phenotypic data were collected on days to flowering, plant height, number of tillers, panicle length, panicle weight, thousand-grain weight, grain weight, number of emerged Striga and area under the Striga number progress curve (ASNPC). Agronomic and Sh parameters were subjected to combined analysis of variance, while genome-wide association analysis was performed on phenotypic and SNPs data. Significant differences (P < 0.001) were detected among the assessed pearl millet genotypes for Sh parameters and agronomic traits. Further, there were significant genotype by Sh interaction for the number of Sh and ASNPC. Twenty-eight SNPs were significantly associated with a low number of emerged Sh located on chromosomes 1, 2, 3, 4, 6, and 7. Four SNPs were associated with days-to-50%-flowering on chromosomes 3, 5, 6, and 7, while five were associated with panicle length on chromosomes 2, 3, and 4. Seven SNPs were linked to thousand-grain weight on chromosomes 2, 3, and 6. The putative SNP markers associated with a low number of emerged Sh and agronomic traits in the assessed genotypes are valuable genomic resources for accelerated breeding and variety deployment of pearl millet with Sh resistance and farmer- and market-preferred agronomic traits.

High-Yielding Varieties Striga-Resistant Agronomic Parameters CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA GENOME-WIDE ASSOCIATION STUDIES STRIGA HERMONTHICA PEARL MILLET

Combination of linkage and association mapping with genomic prediction to infer QTL regions associated with gray leaf spot and northern corn leaf blight resistance in tropical maize

David Berger Yoseph Beyene Collins Juma Suresh L.M. Manje Gowda (2023, [Artículo])

Gray Leaf Spot Northern Corn Leaf Blight CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA MAIZE LEAF SPOTS QUANTITATIVE TRAIT LOCI ASSOCIATION MAPPING GENOME-WIDE ASSOCIATION STUDIES

Mining alleles for tar spot complex resistance from CIMMYT's maize Germplasm Bank

Martha Willcox Juan Burgueño Daniel Jeffers Zakaria Kehel Rosemary Shrestha Kelly Swarts Edward Buckler Sarah Hearne Charles Chen (2022, [Artículo])

Maize Landraces Maize Genetic Resources Allelic Diversity Rare Alleles Phenotypic Characterization Tropical Maize Phyllachora maydis CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA MAIZE LANDRACES GENETIC RESOURCES ALLELES FOLIAR DISEASES CLIMATE CHANGE

Automated in-season rice crop mapping using Sentinel time-series data and Google Earth Engine: A case study in climate-risk prone Bangladesh

Mustafa Kamal Timothy Joseph Krupnik (2024, [Artículo])

High-resolution mapping of rice fields is crucial for understanding and managing rice cultivation in countries like Bangladesh, particularly in the face of climate change. Rice is a vital crop, cultivated in small scale farms that contributes significantly to the economy and food security in Bangladesh. Accurate mapping can facilitate improved rice production, the development of sustainable agricultural management policies, and formulation of strategies for adapting to climatic risks. To address the need for timely and accurate rice mapping, we developed a framework specifically designed for the diverse environmental conditions in Bangladesh. We utilized Sentinel-1 and Sentinel-2 time-series data to identify transplantation and peak seasons and employed the multi-Otsu automatic thresholding approach to map rice during the peak season (April–May). We also compared the performance of a random forest (RF) classifier with the multi-Otsu approach using two different data combinations: D1, which utilizes data from the transplantation and peak seasons (D1 RF) and D2, which utilizes data from the transplantation to the harvest seasons (D2 RF). Our results demonstrated that the multi-Otsu approach achieved an overall classification accuracy (OCA) ranging from 61.18% to 94.43% across all crop zones. The D2 RF showed the highest mean OCA (92.15%) among the fourteen crop zones, followed by D1 RF (89.47%) and multi-Otsu (85.27%). Although the multi-Otsu approach had relatively lower OCA, it proved effective in accurately mapping rice areas prior to harvest, eliminating the need for training samples that can be challenging to obtain during the growing season. In-season rice area maps generated through this framework are crucial for timely decision-making regarding adaptive management in response to climatic stresses and forecasting area-wide productivity. The scalability of our framework across space and time makes it particularly suitable for addressing field data scarcity challenges in countries like Bangladesh and offers the potential for future operationalization.

Synthetic Aperture Radar Random Forest Boro Rice In-Season Maps CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA SAR (RADAR) RICE FLOODING CLIMATE CHANGE

Economics of crop residue management

Vijesh Krishna Maxwell Mkondiwa (2023, [Artículo])

More than five billion metric tons of agricultural residues are produced annually worldwide. Despite having multiple uses and significant potential to augment crop and livestock production, a large share of crop residues is burned, especially in Asian countries. This unsustainable practice causes tremendous air pollution and health hazards while restricting soil nutrient recycling. In this review, we examine the economic rationale for unsustainable residue management. The sustainability of residue utilization is determined by several economic factors, such as local demand for and quantity of residue production, development and dissemination of technologies to absorb excess residue, and market and policy instruments to internalize the social costs of residue burning. The intervention strategy to ensure sustainable residue management depends on public awareness of the private and societal costs of open residue burning.

Crop Biomass Residue Burning Environmental Effects CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CROPS BIOMASS RESIDUES ENVIRONMENTAL IMPACT CLIMATE CHANGE SMALLHOLDERS TECHNOLOGY ADOPTION

Character association study in maize hybrids developed through integration of rapid cycle genomic selection and doubled haploid technology for heat stress tolerance

Prakash Kuchanur Ayyanagouda Patil Pervez Zaidi vinayan mt (2023, [Artículo])

Multi-Parental Synthetics Rapid Cycle Genomic Selection Phenotypic Correlation CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA MAIZE HEAT STRESS MARKER-ASSISTED SELECTION DOUBLED HAPLOIDS PHENOTYPIC VARIATION CLIMATE CHANGE

Heat-tolerant maize for rainfed hot, dry environments in the lowland tropics: from breeding to improved seed delivery

Pervez Zaidi vinayan mt Sudha Nair Prakash Kuchanur Ayyanagouda Patil Atul Kulkarni Prasanna Boddupalli (2023, [Artículo])

Lowland Tropics CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CLIMATE CHANGE DROUGHT HEAT STRESS LOWLAND MAIZE VAPOUR PRESSURE DEFICIT

Agroecology can promote climate change adaptation outcomes without compromising yield in smallholder systems

Sieglinde Snapp Yodit Kebede Eva Wollenberg (2023, [Artículo])

A critical question is whether agroecology can promote climate change mitigation and adaptation outcomes without compromising food security. We assessed the outcomes of smallholder agricultural systems and practices in low- and middle-income countries (LMICs) against 35 mitigation, adaptation, and yield indicators by reviewing 50 articles with 77 cases of agroecological treatments relative to a baseline of conventional practices. Crop yields were higher for 63% of cases reporting yields. Crop diversity, income diversity, net income, reduced income variability, nutrient regulation, and reduced pest infestation, indicators of adaptative capacity, were associated with 70% or more of cases. Limited information on climate change mitigation, such as greenhouse gas emissions and carbon sequestration impacts, was available. Overall, the evidence indicates that use of organic nutrient sources, diversifying systems with legumes and integrated pest management lead to climate change adaptation in multiple contexts. Landscape mosaics, biological control (e.g., enhancement of beneficial organisms) and field sanitation measures do not yet have sufficient evidence based on this review. Widespread adoption of agroecological practices and system transformations shows promise to contribute to climate change services and food security in LMICs. Gaps in adaptation and mitigation strategies and areas for policy and research interventions are finally discussed.

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CLIMATE CHANGE CROPS FOOD SUPPLY GAS EMISSIONS GREENHOUSE GASES FARMING SYSTEMS AGROECOLOGY FOOD SECURITY LESS FAVOURED AREAS SMALLHOLDERS YIELDS NUTRIENTS BIOLOGICAL PEST CONTROL CARBON SEQUESTRATION LEGUMES

Climate change and the northern elephant seal (Mirounga angustirostris) population in Baja California, Mexico

M. Concepción García-Aguilar (2018, [Artículo])

The Earth0s climate is warming, especially in the mid- and high latitudes of the Northern Hemisphere. The northern elephant seal (Mirounga angustirostris) breeds and haul-outs on islands and the mainland of Baja California, Mexico, and California, U.S.A. At the beginning of the 21st century, numbers of elephant seals in California are increasing, but the status of Baja California populations is unknown, and some data suggest they may be decreasing. We hypothesize that the elephant seal population of Baja California is experiencing a decline because the animals are not migrating as far south due to warming sea and air temperatures. Here we assessed population trends of the Baja California population, and climate change in the region. The numbers of northern elephant seals in Baja California colonies have been decreasing since the 1990s, and both the surface waters off Baja California and the local air temperatures have warmed during the last three decades. We propose that declining population sizes may be attributable to decreased migration towards the southern portions of the range in response to the observed temperature increases. Further research is needed to confirm our hypothesis; however, if true, it would imply that elephant seal colonies of Baja California and California are not demographically isolated which would pose challenges to environmental and management policies between Mexico and the United States. © 2018 García-Aguilar et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

air temperature, article, Baja California, climate change, human, Mirounga angustirostris, nonhuman, population size, warming, animal, ecosystem, environmental protection, Mexico, Phocidae, population density, population migration, temperature, Anima CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA