Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California

Sabah Ul-Hasan (2019, [Artículo])

Microbial communities control numerous biogeochemical processes critical for ecosystem function and health. Most analyses of coastal microbial communities focus on the characterization of bacteria present in either sediment or seawater, with fewer studies characterizing both sediment and seawater together at a given site, and even fewer studies including information about non-bacterial microbial communities. As a result, knowledge about the ecological patterns of microbial biodiversity across domains and habitats in coastal communities is limited–despite the fact that archaea, bacteria, and microbial eukaryotes are present and known to interact in coastal habitats. To better understand microbial biodiversity patterns in coastal ecosystems, we characterized sediment and seawater microbial communities for three sites along the coastline of Puerto Nuevo, Baja California, Mexico using both 16S and 18S rRNA gene amplicon sequencing. We found that sediment hosted approximately 500-fold more operational taxonomic units (OTUs) for bacteria, archaea, and microbial eukaryotes than seawater (p < 0.001). Distinct phyla were found in sediment versus seawater samples. Of the top ten most abundant classes, Cytophagia (bacterial) and Chromadorea (eukaryal) were specific to the sediment environment, whereas Cyanobacteria and Bacteroidia (bacterial) and Chlorophyceae (eukaryal) were specific to the seawater environment. A total of 47 unique genera were observed to comprise the core taxa community across environment types and sites. No archaeal taxa were observed as part of either the abundant or core taxa. No significant differences were observed for sediment community composition across domains or between sites. For seawater, the bacterial and archaeal community composition was statistically different for the Major Outlet site (p < 0.05), the site closest to a residential area, and the eukaryal community composition was statistically different between all sites (p < 0.05). Our findings highlight the distinct patterns and spatial heterogeneity in microbial communities of a coastal region in Baja California, Mexico. This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOFÍSICA BIOFÍSICA

Shopping for Ecological Indices? On the Use of Incidence-Based Species Compositional Similarity Measures

IAN MACGREGOR FORS FEDERICO ESCOBAR SARRIA JUAN FERNANDO ESCOBAR IBAÑEZ NATALIA MESA SIERRA FREDY ALEXANDER ALVARADO ROBERTO Rafael Rueda Hernández CLAUDIA ELIZABETH MORENO ORTEGA Ina Falfán ERICK JOAQUIN CORRO MENDEZ Eduardo Octavio Pineda Arredondo Amandine Bourg JOSE LUIS AGUILAR LOPEZ (2022, [Artículo])

"β-diversity has been under continuous debate, with a current need to better understand the way in which a new wave of measures work. We assessed the results of 12 incidence-based β-diversity indices. Our results of gradual species composition overlap between paired assemblages considering progressive differences in species richness show the following: (i) four indices (β-2, β-3, β-3.s, and βr) should be used cautiously given that results with no shared species retrieve results that could be misinterpreted; (ii) all measures conceived specifically as partitioned components of species compositional dissimilarities ought to be used as such and not as independent measures per se; (iii) the non-linear response of some indices to gradual species composition overlap should be interpreted carefully, and further analysis using their results as dependent variables should be performed cautiously; and (iv) two metrics (βsim and βsor) behave predictably and linearly to gradual species composition overlap. We encourage ecologists using measures of β-diversity to fully understand their mathematical nature and type of results under the scenario to be used in order to avoid inappropriate and misleading inferences."

Beta diversity Nestedness Replacement Richness difference Species turnover BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL

Análisis de redes de coexpresión RNA-Seq para identificar patrones genéticos consenso en Arabidopsis en respuesta a la infección por hongos ascomicetes

CYNTHIA GUADALUPE SOTO CARDINUALT (2023, [Tesis de doctorado])

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOQUÍMICA BIOLOGÍA MOLECULAR BIOLOGÍA MOLECULAR

Estudio fitoquímico biodirigido de los componentes presentes en Diospyros anisandra S. F. Blake con potencial actividad antiviral a nivel hemaglutinina y neuraminidasa

MARI TOÑA JUAREZ MENDEZ (2021, [Tesis de doctorado])

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOQUÍMICA BIOLOGÍA MOLECULAR BIOLOGÍA MOLECULAR

Caracterización genética y ambiental de poblaciones silvestres de papaya (Carica papaya L.) en su centro de origen

Pedro Jesús Ruiz Gil (2023, [Tesis de doctorado])

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) DESARROLLO VEGETAL DESARROLLO VEGETAL

The Banana MaWRKY18, MaWRKY45, MaWRKY60 and MaWRKY70 Genes Encode Functional Transcription Factors and Display Differential Expression in Response to Defense Phytohormones

SERGIO GARCIA LAYNES VIRGINIA AURORA HERRERA VALENCIA Lilia Guadalupe Tamayo Torres VERONICA LIMONES BRIONES FELIPE ALONSO BARREDO POOL FRAY MARTIN BAAS ESPINOLA Ángel Gabriel Alpuche Solís CARLOS ALBERTO PUCH HAU SANTY PERAZA ECHEVERRIA (2022, [Artículo])

"WRKY transcription factors (TFs) play key roles in plant defense responses through phytohormone signaling pathways. However, their functions in tropical fruit crops, especially in banana, remain largely unknown. Several WRKY genes from the model plants rice (OsWRKY45) and Arabidopsis (AtWRKY18, AtWRKY60, AtWRKY70) have shown to be attractive TFs for engineering disease resistance. In this study, we isolated four banana cDNAs (MaWRKY18, MaWRKY45, MaWRKY60, and MaWRKY70) with homology to these rice and Arabidopsis WRKY genes. The MaWRKY cDNAs were isolated from the wild banana Musa acuminata ssp. malaccensis, which is resistant to several diseases of this crop and is a progenitor of most banana cultivars. The deduced amino acid sequences of the four MaWRKY cDNAs revealed the presence of the conserved WRKY domain of ~60 amino acids and a zinc-finger motif at the N-terminus. Based on the number of WRKY repeats and the structure of the zinc-finger motif, MaWRKY18 and MaWRKY60 belong to group II of WRKY TFs, while MaWRKY45 and MaWRKY70 are members of group III. Their corresponding proteins were located in the nuclei of onion epidermal cells and were shown to be functional TFs in yeast cells. Moreover, expression analyses revealed that the majority of these MaWRKY genes were upregulated by salicylic acid (SA) or methyl jasmonate (MeJA) phytohormones, although the expression levels were relatively higher with MeJA treatment. The fact that most of these banana WRKY genes were upregulated by SA or MeJA, which are involved in systemic acquired resistance (SAR) or induced systemic resistance (ISR), respectively, make them interesting candidates for bioengineering broad-spectrum resistance in this crop."

Banana Transcription factor WRKY Defense phytohormones Salicylic acid Methyl jasmonate SAR ISR Broad-spectrum resistance BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA

Studies of plant hydraulics and water relations in mexican environments: adaptation, physiology, and applications

Estudios sobre hidráulica y relaciones hídricas de plantas en ambientes mexicanos: adaptaciones, fisiología y aplicaciones

RODRIGO MENDEZ ALONZO Mark Olson Horacio Paz Casandra Reyes García CELENE MARISOL ESPADAS MANRIQUE CLARA TINOCO OJANGUREN Santiago Trueba (2022, [Artículo])

Given the outstanding global progress of research on the hydraulic pathway in plants, and its important role as an indicator of plant mortality risk, we reviewed: (1) the adaptive basis of hydraulic traits and their importance for overall plant function; (2) the number of primary scientific articles on plant hydraulics that have been produced in Mexico in the last 40 years, (3) research related to specific environments in Mexico, and (4) the possible applications of plant hydraulics to natural resource management. Our systematic review included 83 articles. The number of publications per year steadily increased over time, reaching its maximum in 2021. Veracruz and Yucatán are the states where the majority of scientific articles on plant hydraulics have been produced, but for most states less than two publications on this subject appeared in ca. 40 years, and none was found for Oaxaca and Chiapas, the most biodiverse states. In plant hydraulics, the most studied biome in Mexico was the tropical dry forest, followed by crops; trees were the most studied growth-form, followed by herbaceous crops and epiphytes. We point to the need of enhancing research in the interface between plant hydraulic function and remote sensing, as well as developing applications in adaptive forest management and ecological restoration. We hope that this review may ignite a national collaborative effort to quantify critical traits that could inform the hydraulic functioning of Mexican ecosystems, particularly in the underrepresented and highly diverse states of Mexico. © 2022 Sociedad Botanica de Mexico, A.C. All rights reserved.

ADAPTATION DROUGHT VULNERABILITY ECOPHYSIOLOGY PLANT WATER RELATIONS SYSTEMATIC REVIEW BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL

Diversidad arbórea y carbono almacenado en selvas bajo manejo forestal comunitario en Yucatán, México

Tree diversity and carbon stored in communally managed tropical forests in Yucatan, Mexico

MARIA CAMILA HURTADO TORRES JUAN MANUEL DUPUY RADA PATRICIA IRENE MONTAÑEZ ESCALANTE JUAN JOSE MARIA JIMENEZ OSORNIO (2022, [Artículo])

El manejo forestal comunitario sustentable favorece la economía de las comunidades rurales sin comprometer la capacidad de regeneración ni los servicios ecosistémicos que brindan las selvas, como el almacenamiento de carbono. Esta actividad ha sido ampliamente documentada en la Península de Yucatán, pero escasamente evaluada en el estado de Yucatán. En esta investigación se hizo una comparación de composición arbórea, estructura, diversidad y carbono almacenado en la biomasa aérea en tres áreas de selva mediana subcaducifolia con diferente tiempo de regeneración después de un aprovechamiento forestal en el ejido San Agustín (AAF1, AAF10 y AAF+50 años). En cada una se establecieron dos conglomerados conformados por cuatro parcelas circulares de 400 m 2, en las que se identificaron y midieron (diámetro y altura) todos los árboles de diámetro mayor o igual a 7.5 cm. Se analizó la distribución de tamaños de los árboles, la diversidad de especies, su valor de importancia relativo y la biomasa aérea (a partir de ecuaciones alométricas). La especie más dominante fue Bursera simaruba y el AAF+50 presentó la menor dominancia. La distribución de clases diamétricas no varió entre las áreas de aprovechamiento y mostró un patrón de J invertida, lo cual sugiere un alto potencial de regeneración. La diversidad tampoco varió entre las áreas de aprovechamiento, mientras que el carbono almacenado en la biomasa aérea sí, siendo mayor en el AAF+50 (65.2 t /ha). Los resultados indican que el plan de manejo establecido por el ejido no ha afectado la diversidad arbórea ni su potencial de regeneración y permite un alto almacenamiento de carbono.

APROVECHAMIENTO FORESTAL BIOMASA AÉREA DISTRIBUCIÓN DE TAMAÑOS DIVERSIDAD VERDADERA SERVICIOS ECOSISTEMICOS SELVA MEDIANA SUBCADUCIFOLIA BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL

Más allá de los colores del amaranto

JESUS ALFREDO ARAUJO LEON Víctor Aguilar Hernández Ivonne Sánchez del Pino SERGIO RUBEN PERAZA SANCHEZ ROLFFY RUBEN ORTIZ ANDRADE Ligia Guadalupe Brito Argáez (2022, [Artículo])

El amaranto tiene una amplia gama de colores atrayentes, desde amarillos, violetas hasta rojos intensos. Esta heterogeneidad de tonalidades llamó la atención de civilizaciones que se desarrollaron en todas las latitudes del continente americano, como es el caso del imperio azteca que integró este cultivo a su cosmovisión ceremonial para ofrendas a diferentes deidades, dejando una herencia prehispánica cautivadora de su historia. Más allá de los colores, el presente trabajo tiene como objetivo abordar las propiedades nutricionales y beneficios para la salud humana de la diversidad de fitoquímicos que son responsables de los interesantes colores del amaranto.

AMARANTHACEAE AMARANTHUS BETALAINAS METABOLITOS SECUNDARIOS MEXICO SALUD HUMANA BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) DESARROLLO VEGETAL DESARROLLO VEGETAL

Visita del mono araña (Ateles geoffroyi) a las flores de Ceiba pentandra: ¿Quién se beneficia de esta interacción?

JORGE MANUEL DZUL CAUICH MIGUEL ANGEL MUNGUIA ROSAS (2023, [Artículo])

Los monos araña (Ateles geoffroyi) son consumidores especialistas de frutos. Sin embargo, en temporada de escasez de frutos, suelen complementar su dieta con otros elementos como flores, hojas, corteza, insectos, néctar e incluso, suelo. La ingesta de néctar de A. geoffroyi se ha reportado en flores de diversas especies de árboles tropicales; sin embargo, generalmente destruyen o remueven las flores durante esta actividad. En este ensayo, reportamos por primera vez la conducta del mono araña como posible polinizador accidental de las flores de Ceiba pentandra (L.) Gaertn (Malvaceae) en una selva de la península de Yucatán

ARBOLES TROPICALES POLINIZACION POLINIZACION ACCIDENTAL PRIMATES BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL