Autor: XUECAI ZHANG

Replication Data for: Genetic dissection of quantitative resistance to common rust (Puccinia sorghi) in tropical maize (Zea mays L.) by combined GWAS, linkage mapping, and genomic prediction

Michael Olsen Prasanna Boddupalli Felix San Vicente Garcia XUECAI ZHANG (2021)

Significant grain yield losses and poor grain quality can be caused by Common rust a major foliar disease in maize. This dataset provides the genotypic and phenotypic data that were used to perform genome-wide association studies (GWAS) and linkage analysis mapping to dissect the architecture of common rust resistance.

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA

Replication Data for: Genomic prediction of resistance to Tar Spot Complex of maize in multiple populations using genotyping-by-sequencing SNPs

Michael Olsen Prasanna Boddupalli Felix San Vicente Garcia XUECAI ZHANG (2021)

Tar spot complex (TSC) is an important foliar disease for tropical maize. The data provided in this dataset were used to estimate the effectiveness of genomic selection for improving TSC resistance. The results of the analysis are reported in the accompanying journal article

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA

Replication Data for: Genome-Wide Association Mapping And Genomic Prediction Analyses Reveal the Genetic Architecture of Grain Yield and Flowering Time Under Drought and Heat Stress Conditions in Maize

Jill Cairns Raman Babu Manje Gowda Dan Makumbi Cosmos Magorokosho Michael Olsen Prasanna Boddupalli Yanli Lu XUECAI ZHANG (2018)

Drought stress, heat stress, and combination of drought stress and heat stress have been recognized as the major abiotic constraints to maize yields in the main production regions. The phenotypic data used in the current study had been published by Jill E. Cairns et al in 2013 in the journal of Crop Science 53 :1335–1346 ( https://dx.doi.org/10.2135/cropsci2012.09.0545). In this study, the association mapping and genomic prediction analyses were conducted in a collection of 300 tropical and subtropical maize inbred lines to reveal the genetic architecture of grain yield and flowering time under well-watered, drought stress, heat stress, and combined drought and heat stress conditions. The genetic architecture information of the grain yield and flowering time revealed in this study, and the genomic regions identified for the different trait-environment combinations are helpful accelerating the efforts on rapid development of the stress-tolerant maize germplasm through marker-assisted selection or genomic selection.

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA

Replication Data for: Genomic Prediction with Genotype by Environment Interaction Analysis for Kernel Zinc Concentration in Tropical Maize Germplasm

Edna Mageto Jose Crossa Paulino Pérez-Rodríguez Thanda Dhliwayo natalia palacios rojas XUECAI ZHANG (2020)

The Zinc association mapping (ZAM) panel is a set of 923 elite inbred lines from the International Maize and Wheat Improvement Center (CIMMYT) biofortification breeding program. The panel represented wide genetic diversity for kernel Zn and is comprised of several lines with tolerance/resistance to an array of abiotic and biotic stresses commonly affecting maize production in the tropics, improved nitrogen use efficiency, and grain nutritional quality. The ZAM panel_923_LINES_GENO and Zinc association mapping (ZAM) panel_phenotypic data are two files with GBS and phenotypic data for zinc (Zn) from this population. From the ZAM panel, four inbred lines (two with high-Zn and two with low-Zn) were selected and used to form the bi-parental populations, namely DH population1 and DH population2. Genotypic and phenotypic data corresponding to these populations are DH populations1&2_255_LINES_GENO and DH population1_phenotypic data and DH population2_phenotypic data

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA

Replication Data for: Genomic prediction of kernel zinc content in multiple maize populations using genotyping-by-sequencing and repeat amplification sequencing markers

Thanda Dhliwayo Edna Mageto Michael Olsen Jose Crossa Prasanna Boddupalli XUECAI ZHANG (2020)

An association-mapping panel (DTMA) and two DH populations (DH1 and DH2) were used in the current study, which in total includes 487 materials. The dataset includes three types of files. One is the genotype of 487 lines sequenced by GbS, named DTMA_DH2_DH3-955690.hmp.txt; one is the genotype of 487 lines sequenced by rAmpSeq named genotype-rAmpSeq.csv; and the third type of files are the phenotypic data files named DH1-phenotype.csv, DH2-phenotype.csv and DTMA-phenotype.csv.

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA

2022 CIMMYT Maize Latin America Product Announcement for Product Profile LA-PP1 / Anuncio de Productos de Maíz de CIMMYT en Latinoamérica por el Perfíl de Productos LA-PP1

Felix San Vicente Garcia Alberto Antonio Chassaigne Ricciulli Thanda Dhliwayo natalia palacios rojas XUECAI ZHANG Michael Olsen Aparna Das Prasanna Boddupalli (2022)

New and improved maize hybrids, developed by the CIMMYT Global Maize Program, are available for uptake by public and private sector partners, especially those interested in marketing or disseminating hybrid maize seed across Latin America and similar agro-ecological zones. Following a rigorous trialing and a stage-gate advancement process culminating in the 2020 Stage 5 trials, CIMMYT advanced a total of four new elite maize hybrids in Latin America in 2022 for Product Profile LA-PP1. These are yellow and white maize hybrids adapted for the tropical lowlands. Phenotypic data collected in Stage 4 and Stage 5 trials for the four selected hybrids as well as information about the trial sites are provided in this dataset. These trials were conducted through a network of partners, including NARS and private seed companies, in Latin America under various management and environmental conditions. Nuevos y mejorados híbridos desarrollados por el Programa Global de Maíz del CIMMYT se ponen a disposición de instituciones del sector público y privado, especialmente para aquellas instituciones colaboradoras interesadas en la comercialización y diseminación de semilla de maíz en Latinoamérica o en zonas agroecológicas similares. Después de un riguroso proceso de evaluación de germoplasma en distintas etapas que culminó en ensayos de evaluación de híbridos en etapa cinco, el CIMMYT avanzó cuatro nuevos híbridos élite en Latinoamérica en 2022 por el Perfíl de Producto LA-PP1. Estos son híbridos amarillos y blancos adaptados a las tierras bajas tropicales. Datos fenotípicos recopilados en los ensayos en etapa cuatro y cinco por los cuatro hibridos avanzados, además de información sobre los sitios están incluidos en este conjunto de datos. Estos ensayos fueron conducidos bajo diferentes condiciones de manejo y ambientes a través de redes colaborativas con instituciones de investigación pública y empresas semilleras de Latinoamérica.

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA

2022 CIMMYT Maize Latin America Product Announcement for Product Profile LA-PP2B / Anuncio de Productos de Maíz de CIMMYT en Latinoamérica por el Perfíl de Productos LA-PP2B

Thanda Dhliwayo Felix San Vicente Garcia Alberto Antonio Chassaigne Ricciulli natalia palacios rojas XUECAI ZHANG Michael Olsen Aparna Das Prasanna Boddupalli (2022)

New and improved maize hybrids, developed by the CIMMYT Global Maize Program, are available for uptake by public and private sector partners, especially those interested in marketing or disseminating hybrid maize seed across Latin America and similar agro-ecological zones. Following a rigorous trialing and a stage-gate advancement process culminating in the 2020 Stage 5 trials, CIMMYT advanced a total of one new elite maize hybrid in Latin America in 2022 for product profile LA-PP2B. Phenotypic data collected in Stage 4 and Stage 5 trials for the selected hybrid as well as information about the trial sites are provided in this dataset. These trials were conducted through a network of partners, including NARS and private seed companies, in Mexico under various management and environmental conditions. Nuevos y mejorados híbridos desarrollados por el Programa Global de Maíz del CIMMYT se ponen a disposición de instituciones del sector público y privado, especialmente para aquellas instituciones colaboradoras interesadas en la comercialización y diseminación de semilla de maíz en Latinoamérica o en zonas agroecológicas similares. Después de un riguroso proceso de evaluación de germoplasma en distintas etapas que culminó en ensayos de evaluación de híbridos en etapa cinco, el CIMMYT avanzó un nuevo híbrido élite en Latinoamérica en 2022 por el perfíl de producto LA-PP2B. Datos fenotípicos recopilados en los ensayos en etapa cuatro y cinco, además de información sobre los sitios están incluidos en este conjunto de datos. Estos ensayos fueron conducidos bajo diferentes condiciones de manejo y ambientes a través de redes colaborativas con instituciones de investigación pública y empresas semilleras de Latinoamérica.

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA