Algorithmic differentiation of linear mixed models with variance-covariance structures

Fernando Henrique Toledo Jose Crossa Juan Burgueño Keith Gardner Rosa Angela Pacheco Gil (2023, [Objeto de congreso])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA MATHEMATICAL MODELS ALGORITHMS LINEAR MODELS

High quality diet improves lipid metabolic profile and breeding performance in the blue-footed booby, a long-lived seabird

ERICK GONZALEZ MEDINA (2018, [Artículo])

Understanding the role of diet in the physiological condition of adults during reproduction and hence its effect on reproductive performance is fundamental to understand reproductive strategies in long-lived animals. In birds, little is known about the influence of the quality of food consumed at the beginning of the reproductive period and its short-term effects on reproductive performance. To assess the role of diet in the physiological condition of female blue-footed booby, Sula nebouxii (BFBO), during reproduction we evaluated whether individual differences in diet (assessed by using δ13C and δ15N values of whole blood from female birds and muscle tissue of the principal prey species) prior to egg laying and during incubation influenced their lipid metabolic profile (measured as triglyceride levels and C:N ratio) and their reproductive performance (defined by laying date, clutch size and hatching success). Females with higher δ15N values in their blood during the courtship and incubation periods had a higher lipid metabolic profile, earlier laying date, greater clutch size (2–3 eggs) and higher hatching success. Females that laid earlier and more eggs (2–3 eggs) consumed more Pacific anchoveta (Cetengraulis mysticetus) and Pacific thread herring (Opisthonema libertate) than did other females. These two prey species also had high amounts of lipids (C:N ratio) and caloric content (Kcal/g fresh weight). The quality of food consumed by females at the beginning of reproduction affected their physiological condition, as well as their short-term reproductive performance. Our work emphasizes the importance of determining the influence of food quality during reproduction to understand the reproductive decisions and consequences in long-lived animals. © 2018 González-Medina et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

nitrogen 15, triacylglycerol, lipid, animal experiment, Article, breeding, carbon nitrogen ratio, clutch size, controlled study, courtship, diet, egg laying, female, food intake, hatching, lipid metabolism, muscle tissue, nonhuman, prey, reproduction CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Protein retention assessment of four levels of poultry by-product substitution of fishmeal in rainbow trout (Oncorhynchus mykiss) diets using stable isotopes of nitrogen (δ15N) as natural tracers

DANIEL BADILLO ZAPATA (2014, [Artículo])

This is second part from an experiment where the nitrogen retention of poultry by-product meal (PBM) compared to fishmeal (FM) was evaluated using traditional indices. Here a quantitative method using stable isotope ratios of nitrogen (δ15N values) as natural tracers of nitrogen incorporation into fish biomass is assessed. Juvenile rainbow trout (Oncorhynchus mykiss) were fed for 80 days on isotopically distinct diets in which 0, 33, 66 and 100% of FM as main protein source was replaced by PBM. The diets were isonitrogenous, isolipidic and similar in gross energy content. Fish in all treatments reached isotopic equilibrium by the end of the experiment. Two-source isotope mixing models that incorporated the isotopic composition of FM and PBM as well as that of formulated feeds, empirically derived trophic discrimination factors and the isotopic composition of fish that had reached isotopic equilibrium to the diets were used to obtain a quantitative estimate of the retention of each source of nitrogen. Fish fed the diets with 33 and 66% replacement of FM by PBM retained poultry by-product meal roughly in proportion to its level of inclusion in the diets, whereas no differences were detected in the protein efficiency ratio. Coupled with the similar biomass gain of fishes fed the different diets, our results support the inclusion of PBM as replacement for fishmeal in aquaculture feeds. A re-feeding experiment in which all fish were fed a diet of 100% FM for 28 days indicated isotopic turnover occurred very fast, providing further support for the potential of isotopic ratios as tracers of the retention of specific protein sources into fish tissues. Stable isotope analysis is a useful tool for studies that seek to obtain quantitative estimates of the retention of different protein sources. © 2014 Badillo et al.

nitrogen 15, nitrogen, protein intake, animal behavior, animal experiment, animal food, animal tissue, aquaculture, Article, biomass, controlled study, energy metabolism, food composition, juvenile animal, nonhuman, poultry by product meal, protein a CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Genetic effects of Rht-B1b and Rht-D1b dwarfing alleles on plant height and agronomic traits of bread wheat (Triticum aestivum L.) breeding lines

Zine El Abidine Fellahi Abderrahmane Hannachi Susanne Dreisigacker deepmala sehgal Hamenna Bouzerzour (2023, [Artículo])

Pleiotropic Effects Reduced Height Genes CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA PLANT HEIGHT TRITICUM AESTIVUM YIELD COMPONENTS ALLELES BREEDING LINES

Determining factors of durum wheat bread loaf volume and alveograph characteristics under optimal, drought and heat stress conditions

Maryke Labuschagne Carlos Guzman Jose Crossa Angeline van Biljon (2023, [Artículo])

Loaf Volume Durum Wheat Flour Protein Content CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA ALVEOGRAPHS HARD WHEAT HEAT STRESS DROUGHT STRESS

Herramientas biológicas para el análisis de toxicidad y detección de efectos asociados a contaminantes, en sistemas acuáticos epicontinentales, costeros y aguas de uso antropogénico: desarrollo, adaptación y calibración de tecnologías

YOLANDA PICA GRANADOS SONIA GONZALEZ REBOLLAR (2011, [Documento de trabajo])

El objetivo del proyecto fue, desarrollar y adaptar metodologías basadas en la respuesta biológica para la detección de efectos asociados a contaminantes convencionales y emergentes, entre otros, en ambientes epicontinentales, costeros y en aguas de uso antropogénico, que sean de utilidad en estudios ecotoxicológicos, de evaluación de riesgo ambiental de factores determinantes para los florecimientos algales potencialmente tóxicos en cuerpos de agua.

Ecotoxicología Algas Informes de proyectos BIOLOGÍA Y QUÍMICA

Diagnóstico de las condiciones atmosféricas asociadas al arribo de sargazo a costas de Quintana Roo

José Antonio Salinas Prieto María Eugenia Maya Magaña (2019, [Documento de trabajo])

El arribo del sargazo en forma masiva genera impactos ambientales, sociales y económicos adversos. Se sabe poco de su origen y trayectoria, así como de las condiciones atmosféricas y oceánicas bajo las cuales arriba a costas de Quintana Roo. En este trabajo se presenta un diagnóstico de la variabilidad estacional, anual e interanual de las circulaciones atmosféricas en el Atlántico y Caribe identificando las condiciones atmosféricas bajo las cuales arriba de sargazo a costas de Quintana Roo. Se analizaron 30 años de datos de viento superficial de CFRS (Climate Forecast System Reanalysis) de NCAR sobre el Atlántico y Caribe, dividiendo la zona en seis áreas, para cada una se estimó su variabilidad estacional, anual e interanual, así como sus valores extremos del período 1989 a 2018, enfocándose el estudio tanto al mar Caribe como a la costa Atlántica de Brasil.

Algas Sargazo Climatología Diagnóstico CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA

Herramientas biológicas para el análisis de toxicidad y detección de efectos asociados a contaminantes, en sistemas acuáticos epicontinentales, costeros y aguas de uso antropogénico : desarrollo, adaptación y calibración de tecnologías: 2a parte

YOLANDA PICA GRANADOS (2013, [Documento de trabajo])

El presente proyecto, iniciado en el año 2011 con continuidad en 2012, se ha efectuado para desarrollar y/o adaptar herramientas biológicas para su aplicación en el contexto ambiental, con el fin de lograr el desarrollo o adaptación de procedimientos de análisis biológico que permitan la evaluación de los posibles efectos de la amplia gama de xenobióticos que actualmente residen en los ecosistemas, incluidos tanto los contaminantes convencionales enlistados en normas, como los compuestos emergentes, respecto a los cuales es necesario intensificar la investigación para el desarrollo de técnicas analíticas, biológicas y químicas, que sean de utilidad para su identificación en el ambiente y para la definición de efectos en la biota y del riesgo al ambiente.

Ecotoxicología Danio rerio Alevines BIOLOGÍA Y QUÍMICA

El duraznillo (Tapirira mexicana): una especie comestible poco conocida

Leonardo Díaz Sánchez CESAR ISIDRO CARVAJAL HERNANDEZ ELIA NORA AQUINO BOLAÑOS MARIA DEL SOCORRO HERRERA MEZA (2023, [Artículo])

Tapirira mexicana es un árbol de la familia Anacardiaceae (familia del mango), que se conoce como “duraznillo” o “huichini” (entre otros nombres comunes). En algunos lugares de México se consume la semilla como alimento secundario. Las semillas contienen ácidos grasos poliinsaturados y monoinsaturados cuyo potencial alimenticio y efectos en el organismo humano se desconocen. Resaltamos la importancia de Tapirira mexicana, en particular el consumo de sus semillas, una especie comestible que es poco valorada y reconocida en México.

ALIMENTO ANACARDIACEAE DURAZNILLO ESPECIE MEXICANA SEMILLAS BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL

Offshore wind energy climate projection using UPSCALE climate data under the RCP8.5 emission scenario

MARKUS SEBASTIAN GROSS (2016, [Artículo])

In previous work, the authors demonstrated how data from climate simulations can be utilized to estimate regional wind power densities. In particular, it was shown that the quality of wind power densities, estimated from the UPSCALE global dataset in offshore regions of Mexico, compared well with regional high resolution studies. Additionally, a link between surface temperature and moist air density in the estimates was presented. UPSCALE is an acronym for UK on PRACE (the Partnership for Advanced Computing in Europe)-weather-resolving Simulations of Climate for globAL Environmental risk. The UPSCALE experiment was performed in 2012 by NCAS (National Centre for Atmospheric Science)- Climate, at the University of Reading and the UK Met Office Hadley Centre. The study included a 25.6-year, five-member ensemble simulation of the HadGEM3 global atmosphere, at 25km resolution for present climate conditions. The initial conditions for the ensemble runs were taken from consecutive days of a test configuration. In the present paper, the emphasis is placed on the single climate run for a potential future climate scenario in the UPSCALE experiment dataset, using the Representation Concentrations Pathways (RCP) 8.5 climate change scenario. Firstly, some tests were performed to ensure that the results using only one instantiation of the current climate dataset are as robust as possible within the constraints of the available data. In order to achieve this, an artificial time series over a longer sampling period was created. Then, it was shown that these longer time series provided almost the same results than the short ones, thus leading to the argument that the short time series is sufficient to capture the climate. Finally, with the confidence that one instantiation is sufficient, the future climate dataset was analysed to provide, for the first time, a projection of future changes in wind power resources using the UPSCALE dataset. It is hoped that this, in turn, will provide some guidance for wind power developers and policy makers to prepare and adapt for climate change impacts on wind energy production. Although offshore locations around Mexico were used as a case study, the dataset is global and hence the methodology presented can be readily applied at any desired location. © Copyright 2016 Gross, Magar. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reprod

atmosphere, climate change, Europe, Mexico, sampling, time series analysis, university, weather, wind power, climate, risk, theoretical model, wind, Climate, Models, Theoretical, Risk, Wind CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA