Multi-trait, multi-environment deep learning modeling for genomic-enabled prediction of plant traits

Osval Antonio Montesinos-Lopez Jose Crossa Francisco Javier Martin Vallejo (2018, [Artículo])

Deep Learning Genomic Prediction Bayesian Modeling Shared Data Resources CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA BAYESIAN THEORY RESOURCES DATA BREEDING PROGRAMMES

The water crisis in the south-central region of the Chihuahua State and the 1997 UN Convention

Jorge Arturo Salas Plata Mendoza Thelma J. Garcia (2022, [Artículo, Artículo])

The present writing focuses on the water crisis in the south-central part of Chihuahua State in the year 2020. Recent literature points to the drought, excess demand for the vital liquid and overpopulation of this region, among other issues, as the causes of the emergency. This paper argues that the reasons mentioned above are not causes, but effects of an economic policy of capital valorization and accumulation, which go far beyond the carrying capacity of the ecosystems and their capacity to regulate the polluting processes. The obsolescence of the water treaties between Mexico and the US make it necessary to consider other alternatives such as the 1997 UN Convention on water.

Chihuahua water crisis hydro-agricultural crisis carrying capacity expansive growth 1997 UN Convention Ecological Economics crisis del agua crisis hidroagrícola capacidad de carga crecimiento expansivo Convención de la ONU de 1997 Economía Ecológica CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA

Do provisioning ecosystem services change along gradients of increasing agricultural production?

Ronju Ahammad Stephanie Tomscha Sarah Gergel Frédéric Baudron Jean-Yves Duriaux Chavarría Samson Foli Dominic Rowland Josh Van Vianen Terence Sunderland (2024, [Artículo])

Context: Increasing agricultural production shapes the flow of ecosystem services (ES), including provisioning services that support the livelihoods and nutrition of people in tropical developing countries. Although our broad understanding of the social-ecological consequences of agricultural intensification is growing, how it impacts provisioning ES is still unknown. Objectives: We examined the household use of provisioning ES across a gradient of increasing agricultural production in seven tropical countries (Bangladesh, Burkina Faso, Cameroon, Ethiopia, Indonesia, Nicaragua and Zambia). We answered two overarching questions: (1) does the use of provisioning ES differ along gradients of agriculture production ranging from zones of subsistence to moderate and to high agriculture production? and (2) are there synergies and/or trade-offs within and among groups of ES within these zones? Methods: Using structured surveys, we asked 1900 households about their assets, livestock, crops, and collection of forest products. These questions allowed us to assess the number of provisioning ES households used, and whether the ES used are functionally substitutable (i.e., used similarly for nutrition, material, and energy). Finally, we explored synergies and trade-offs among household use of provisioning ES. Results: As agricultural production increased, provisioning ES declined both in total number and in different functional groups used. We found more severe decreases in ES for relatively poorer households. Within the functional groups of ES, synergistic relationships were more often found than trade-offs in all zones, including significant synergies among livestock products (dairy, eggs, meat) and fruits. Conclusions: Considering landscape context provides opportunities to enhance synergies among provisioning services for households, supporting resilient food systems and human well-being.

Agricultural Production Zones Agricultural Intensifcation Synergies and Trade-Offs Landscape Multifunctionality Social-Ecological Systems CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA AGRICULTURE INTENSIFICATION ECOSYSTEM SERVICES LANDSCAPE SOCIAL-ECOLOGICAL RESILIENCE ECOSYSTEM SERVICES

Chapter 11. Genomic insights on global journeys of adaptive wheat genes that brought us to modern wheat

deepmala sehgal Laura Dixon Diego Pequeno Jose Crossa Alison Bentley Susanne Dreisigacker (2024, [Capítulo de libro])

Hexaploid Wheat Adaptive Genes Novel Genomic Regions Gene-Based Modeling Process-Based Modeling Global Food Security CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA HEXAPLOIDY WHEAT QUANTITATIVE TRAIT LOCI MODELLING FOOD SECURITY

Procesos oceanográficos asociados al desarrollo y dispersión de florecimientos de Gymnodinium catenatum en el norte del Golfo de California

Oceanographic processes associated with harmful algal blooms of Gymnodinium catenatum development and dispersal in the northern Gulf of California

GABRIELA RESENDIZ COLORADO (2023, [Tesis de doctorado])

Durante los últimos años, durante la temporada de invierno y primavera, se ha detectado la presencia de florecimientos algales nocivos (FAN) causados por el dinoflagelado Gymnodinium catenatum en el norte del golfo de California (NGC). Estos eventos tienen impactos ecológicos, económicos y sociales negativos porque G. catenatum es una especie productora de saxitoxina, la cual, está asociada al envenenamiento paralítico por consumo de mariscos, lo que origina que la autoridad sanitaria se vea en la necesidad de implementar vedas en áreas de extracción de almeja generosa en el NGC al detectar producto contaminado. Por lo tanto, es necesario conocer los procesos físicos que provocan la ocurrencia y recurrencia de estos eventos, así como contar con un sistema de monitoreo y alerta temprana que permita tomar decisiones y acciones oportunas de mitigación contra los efectos perjudiciales de estos fenómenos. En este trabajo se abordaron estas necesidades de investigación por medio de la implementación de un método de detección remota de estos FAN, utilizando la clasificación de máxima verosimilitud basada en los datos de dos eventos sucedidos en 2015 y 2017. Los resultados de este enfoque fueron satisfactorios al reproducir la temporalidad de la presencia de la especie documentada por medio de muestreos semanales en la bahía de San Felipe, así como de la detección geográfica en las áreas que se conocen que son afectadas recurrentemente. Para estudiar los procesos físicos asociados a estos FAN, se implementó un modelo hidrodinámico usando el Sistema de Modelación Oceánica Regional (ROMS) para el norte del golfo de California. A partir de este modelo se obtuvieron datos de variables como energía cinética turbulenta, temperatura, corrientes y se complementaron con datos de esfuerzo de fondo producido por oleaje estimados a partir de datos de la quinta generación del reanálisis atmosférico del clima global del ECMWF (ERA-5), los análisis de estas variables y la abundancia semanal de G. catenatum permitieron identificar que los principales procesos asociados a la formación de estos florecimientos es el incremento del esfuerzo de fondo asociado al oleaje y la turbulencia. Estos, a su vez, tienen una relación con el cambio en el patrón del viento que se caracteriza por ser del noroeste durante las temporadas de invierno y primavera. Respecto a la dispersión de los florecimientos algales, con base en los datos obtenidos del modelo hidrodinámico, se realizaron experimentos

During the recent winter and spring seasons, harmful algal blooms (HABs) caused by the dinoflagellate Gymnodinium catenatum have been detected in the northern Gulf of California (NGC). These events have negative ecological, economic, and social impacts because G. catenatum is a species producer of saxitoxin, which is associated with paralytic shellfish poisoning, which causes the need to implement bans by the health authority in extraction areas of generous clam in the NGC when detecting contaminated products. Therefore, it is necessary to identify the physical processes that cause the occurrence and recurrence of these events and have a monitoring and early warning system that allows timely decisions and mitigation actions to be taken against the harmful effects of these henomena. In this work, these research gaps are approached by implementing a remote detection method for these HABs, using maximum likelihood classification based on data from two events in 2015 and 2017. The results of this approach were satisfactory by reproducing the temporality presence of Gymnodinium catenatum documented through weekly sampling in San Felipe Bay, as well as geographic detection in areas known to be recurrently affected. To study the physical processes associated with these HABs, a hydrodynamic model was implemented using the Regional Ocean Modeling System (ROMS) for the northern Gulf of California. From this model, variables such as turbulent kinetic energy, temperature, and currents were obtained and were complemented with data on bottom stress produced by waves estimated from the fifth generation ECMWF atmospheric reanalysis of the global climate (ERA-5) data. Analyzing these variables and the weekly abundance of G. catenatum, it was possible that the processes associated with forming these blooms are the increase in bottom stress related to waves and turbulence. These processes are related to the change in the wind pattern characterized by northwest winds during the winter and spring seasons. Regarding the dispersion of algal blooms, based on the data obtained from the hydrodynamic model, lagrangian experiments were carried out to estimate the transport of the HAB. The results showed that the modeled dispersion corresponds with the detection carried out with the remote sensing method mplemented in this work for the 2017 event. The results obtained from this work are essential knowledge for the operational implementation of monitoring and early warning systems ..

Gymnodinium catenatum, florecimientos algales nocivos, percepción remota, modelación hidrodinámica, norte del golfo de California : Gymnodinium catenatum, harmful algal bloom, remote sensing, hydrodynamic modeling, northern Gulf of California BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA OTRAS ESPECIALIDADES DE LA BIOLOGÍA OTRAS OTRAS