Inferring cetacean population densities from the absolute dynamic topography of the ocean in a hierarchical bayesian framework

MARIO ANDRES PARDO RUEDA (2015, [Artículo])

We inferred the population densities of blue whales (Balaenoptera musculus) and short-beaked common dolphins (Delphinus delphis) in the Northeast Pacific Ocean as functions of the water-column's physical structure by implementing hierarchical models in a Bayesian framework. This approach allowed us to propagate the uncertainty of the field observations into the inference of species-habitat relationships and to generate spatially explicit population density predictions with reduced effects of sampling heterogeneity. Our hypothesis was that the large-scale spatial distributions of these two cetacean species respond primarily to ecological processes resulting from shoaling and outcropping of the pycnocline in regions of wind-forced upwelling and eddy-like circulation. Physically, these processes affect the thermodynamic balance of the water column, decreasing its volume and thus the height of the absolute dynamic topography (ADT). Biologically, they lead to elevated primary productivity and persistent aggregation of low-trophic-level prey. Unlike other remotely sensed variables, ADT provides information about the structure of the entire water column and it is also routinely measured at high spatial-temporal resolution by satellite altimeters with uniform global coverage. Our models provide spatially explicit population density predictions for both species, even in areas where the pycnocline shoals but does not outcrop (e. g. the Costa Rica Dome and the North Equatorial Countercurrent thermocline ridge). Interannual variations in distribution during El Niño anomalies suggest that the population density of both species decreases dramatically in the Equatorial Cold Tongue and the Costa Rica Dome, and that their distributions retract to particular areas that remain productive, such as the more oceanic waters in the central California Current System, the northern Gulf of California, the North Equatorial Countercurrent thermocline ridge, and the more southern portion of the Humboldt Current System. We posit that such reductions in available foraging habitats during climatic disturbances could incur high energetic costs on these populations, ultimately affecting individual fitness and survival. © 2015, public library of science. All rights reserved.

CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Evaluación del aporte hidrológico superficial en el sistema de bloque de montaña de la subcuenca Ojos Negros

Surface hydrological contribution evaluation in the mountain block system of the Ojos Negros subbasin

Ricardo Adolfo Hidalgo Rodríguez (2023, [Tesis de maestría])

Este trabajo se realizó en la sección de la subcuenca Ojos Negros, sobre el bloque de montaña de la Sierra de Juárez (denominado Sistema de Bloque de Montaña de la Subcuenca Ojos Negros, SBMON), en el estado de Baja California, México. Se llevó a cabo un modelado hidrológico del escurrimiento en el periodo 1981-2020 para cuantificar el aporte hidrológico de salida hacia el Valle de Ojos Negros. En cumplimiento del objetivo, se diseñó una base de datos meteorológicos compuesta por los registros diarios de las estaciones meteorológicas en la región y del modelo de forzamiento de superficie NLDAS2. Se recopiló un conjunto de información edafológica, forestal, geológica, satelital y topográfica dentro del área de estudio. Con la información recolectada, se elaboraron dos modelos de escurrimiento empleando el método de las curvas numeradas (CN) del Departamento de Agricultura de los Estados Unidos (USDA). Los modelos fueron ajustados con los valores de sustracción inicial, Ia, de 0.2 (modelo A) y 0.05 (modelo B). Las series generadas se compararon con los resultados del modelo GCN250, basado en los datos edafológicos y forestales de la Agencia Espacial Europea (ESA). A nivel regional, se observó un aporte de escurrimiento anual de 9.2 Mm3 (GCN250), 10.9 Mm3 (modelo A) y 4.7 Mm3 (modelo B). La sección oriental del SBMON mostró el mayor potencial de infiltración, pero también fue la zona con mayor producción de escurrimiento en todos los modelos. Desde la perspectiva estacional, se identificaron periodos donde los escurrimientos formados a partir de las lluvias en verano superaron a los generados en la temporada invernal. Con base a los resultados obtenidos, el aporte de escurrimiento dentro del SBMON es significativa, no obstante, los procesos de escurrimiento subsuperficial y subterráneo pueden tener un papel todavía más importante en la recarga hacia el Valle de Ojos Negros. Se recomienda dar seguimiento a la variación del contenido de humedad en los suelos del SBMON, a los patrones anuales y estacionales de precipitación, así como la contribución hídrica del derretimiento de la nieve en la Sierra de Juárez.

This work was realized in the section of the Ojos Negros sub-basin, on the Sierra de Juárez mountain block (denominated Mountain Block System of the Ojos Negros Sub-Basin, SBMON), in the state of Baja California, Mexico. A hydrological runoff modeling was carried out for the period 1981-2020 to quantify the output hydrological contribution toward the Ojos Negros Valley. In compliance with the objective, a meteorological database consisting of the daily records of the meteorological stations and the NLDAS-2 surface forcing model was designed. A set of edaphological, forestry, geological, satellite, and topographical information was collected within the study area. Based on the collected information, two runoff models were developed using the Curve Number (CN) method from the United States Department of Agriculture (USDA). The models were adjusted with the initial subtraction values, Ia, of 0.2 (model A) and 0.05 (model B). The generated series were compared with the results of the GCN250 model, based on soil and forestry data from the European Space Agency (ESA). Regionally, an annual runoff contribution of 9.2 Mm3 (GCN250), 10.9 Mm3 (model A), and 4.7 Mm3 (model B) was observed. The eastern section of the SBMON showed the highest infiltration potential, but it was also the area with the highest runoff production in all models. From the seasonal perspective, periods were identified where the runoff formed from summer rains exceeded that generated in the winter season. Based on the results obtained, the runoff contribution within the SBMON is significant, however, the subsurface and underground runoff processes may have an even more key role in the recharge toward the Ojos Negros Valley. It is recommended to monitor the variation of the moisture content in the SBMON soils, the annual and seasonal patterns of precipitation, as well as the water contribution from the snow melting in the Sierra de Juárez.

Sistema de bloque de montaña de la subcuenca Ojos Negros, escurrimiento, infiltración, método de las Curvas Numeradas, GCN250 Mountain Block System of the Ojos Negros Sub-Basin, runoff, infiltration, Curve Number method, GCN250 CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OTRAS ESPECIALIDADES DE LA TIERRA, ESPACIO O ENTORNO OTRAS OTRAS

Vibrissa growth rate in California sea lions based on environmental and isotopic oscillations

MARTHA PATRICIA ROSAS HERNANDEZ (2018, [Artículo])

Pinniped vibrissae provide information on changes in diet at seasonal and annual scales; however, species-specific growth patterns must first be determined in order to interpret these data. In this study, a simple linear model was used to estimate the growth rate of vibrissae from adult female California sea lions (Zalophus californianus) from San Esteban Island in the Gulf of California, Mexico. The δ15N and δ13C values do not display a marked oscillatory pattern that would permit direct determination of the time period contained in each vibrissa; thus, time (age) was calculated in two ways: 1) based on the correlation between the observed number of peaks (Fourier series) in the δ15N profile and the length of each vibrissa, and 2) through direct comparison with the observed number of peaks in the δ15N profile. Cross-correlation confirmed that the two peaks in the δ15N profile reflected the two peaks in the chlorophyll-a concentration recorded annually around the island. The mean growth rate obtained from the correlation was 0.08 ± 0.01 mm d-1, while that calculated based on the observed number of peaks was 0.10 ± 0.05 mm d-1. Both are consistent with the rates reported for adult females of other otariid species (0.07 to 0.11 mm d-1). Vibrissa growth rates vary by individual, age, sex, and species; moreover, small differences in the growth rate can result in significant differences over the time periods represented by the isotopic signal. Thus, it is important to assess this parameter on a species-by-species basis. © 2018 Rosas-Hernández et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

carbon, nitrogen, animal, California, chemistry, diet, female, island (geological), Mexico, Otariidae, physiology, Animals, California, Carbon Isotopes, Diet, Female, Islands, Mexico, Nitrogen Isotopes, Sea Lions CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Mapas y esferas que redibujaron el mundo: el arribo de Cristóbal Colón a Cipango

JUAN ANTONIO LAVIADA (2023, [Capítulo de libro])

Universidad Autónoma Metropolitana (México). Unidad Azcapotzalco. División de Ciencias y Artes para el Diseño. Departamento de Evaluación del Diseño en el Tiempo. Área de Estudios Urbanos.

Desde su arribo a las islas, Colón estaba convencido de estar en las cercanías de Cipango, nada parecía convencerlo de lo contrario; todo lo que observa lo interpreta desde su convicción de estar en Asia. En el primer apartado de este capítulo se intentará demostrar tomando como referencia los escritos del propio Cristóbal Colón que éste consultó cartas de navegación, esferas e incluso tenía la firme intención de realizar una carta de navegación con el fin de mostrar la ubicación de Cipango. El segundo apartado refiere al hecho de que la única fuente documental sobre Cipango de la cual se tenía noticia dependía exclusivamente de narraciones de Marco Polo y se debatirá si Colón conoció o no dichos relatos.

Cartography--America--History. America--Discovery and exploration. Columbus, Christopher--Influence. Cartografía -- Historia. GA401 CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO GEOGRAFÍA CARTOGRAFÍA GEOGRÁFICA

Índice de calidad del agua de cuerpos de agua dulce kársticos de Cancún y Playa del Carmen

EUNICES ARELY HERNANDEZ DE LA O (2023, [Tesis de maestría])

CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO HIDROLOGÍA AGUAS SUBTERRÁNEAS AGUAS SUBTERRÁNEAS

Integrative taxonomy and molecular phylogeny of genus Aplysina (Demospongiae: Verongida) from Mexican Pacific

José Antonio Cruz-Barraza (2012, [Artículo])

Integrative taxonomy provides a major approximation to species delimitation based on integration of different perspectives (e.g. morphology, biochemistry and DNA sequences). The aim of this study was to assess the relationships and boundaries among Eastern Pacific Aplysina species using morphological, biochemical and molecular data. For this, a collection of sponges of the genus Aplysina from the Mexican Pacific was studied on the basis of their morphological, chemical (chitin composition), and molecular markers (mitochondrial COI and nuclear ribosomal rDNA: ITS1-5.8-ITS2). Three morphological species were identified, two of which are new to science. A. clathrata sp. nov. is a yellow to yellow-reddish or -brownish sponge, characterized by external clathrate-like morphology; A. revillagigedi sp. nov. is a lemon yellow to green, cushion-shaped sometimes lobate sponge, characterized by conspicuous oscules, which are slightly elevated and usually linearly distributed on rims; and A. gerardogreeni a known species distributed along the Mexican Pacific coast. Chitin was identified as the main structural component within skeletons of the three species using FTIR, confirming that it is shared among Verongida sponges. Morphological differences were confirmed by DNA sequences from nuclear ITS1-5.8-ITS2. Mitochondrial COI sequences showed extremely low but diagnostic variability for Aplysina revillagigedi sp. nov., thus our results corroborate that COI has limited power for DNA-barcoding of sponges and should be complemented with other markers (e.g. rDNA). Phylogenetic analyses of Aplysina sequences from the Eastern Pacific and Caribbean, resolved two allopatric and reciprocally monophyletic groups for each region. Eastern Pacific species were grouped in general accordance with the taxonomic hypothesis based on morphological characters. An identification key of Eastern Pacific Aplysina species is presented. Our results constitute one of the first approximations to integrative taxonomy, phylogeny and evolutionary biogeography of Eastern Pacific marine sponges; an approach that will significantly contribute to our better understanding of their diversity and evolutionary history. © 2012 Cruz et al.

chitin, genomic DNA, mitochondrial DNA, molecular marker, ribosome DNA, allopatry, Aplysina clatharata, Aplysina gerardogreeni, Aplysina revillagigedi, article, DNA barcoding, DNA sequence, genetic polymorphism, genetic variability, infrared spectros CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Modelado y acoplamiento de la conductividad eléctrica e hidráulica a partir de tomografía de rocas

Modeling and coupling of electrical and hydraulic conductivity from rock tomography

Miguel Ángel Martínez Rodríguez (2022, [Tesis de maestría])

En este trabajo se emplearon técnicas de modelado numérico para simular el flujo de corriente eléctrica y de fluido a través de medios porosos con el fin de determinar el factor de resistividad y la permeabilidad, así como la distribución de los campos de densidad de corriente eléctrica y velocidad de flujo. Para el modelado de flujo eléctrico se desarrolló un algoritmo basado en diferencias finitas, mientras que para el modelado hidráulico se empleó una librería reportada en la literatura, basada en el método de redes de Boltzmann. En ambos esquemas de modelado se establecieron condiciones en la frontera poro-grano para modelar los procesos físicos exclusivamente en el espacio poroso. Los valores estimados de factor de resistividad y de permeabilidad, así como la porosidad, se emplearon para estudiar las correlaciones entre estas propiedades a través de relaciones petrofísicas. Para esto, se propuso una expresión que relaciona la permeabilidad y la porosidad y, empleando una relación existente entre el factor de resistividad y la porosidad, se propuso también una relación directa entre la permeabilidad y el factor de resistividad. Las relaciones propuestas fueron aplicadas a los valores numéricos obtenidos para paquetes de esferas generados numéricamente y se encontró que se ajustan mejor a los datos en comparación con las relaciones más comúnmente utilizadas, especialmente para porosidades altas. Se mostró también que estas relaciones petrofísicas toman la forma de las relaciones más comunes conocidas cuando se trata con porosidades bajas. Valores obtenidos de imágenes digitales de un paquete de esferas sintético y una muestra de dolomita mostraron que las expresiones para porosidades bajas son suficientes para ajustar datos de medios porosos con porosidades menores a un valor entre 0.3 y 0.4. Finalmente, se analizaron el factor de resistividad, la permeabilidad, las relaciones petrofísicas, y las distribuciones espaciales y estadísticas de los campos vectoriales de flujo se analizaron para comparar los fenómenos de transporte eléctrico e hidráulico, encontrando que algunos factores, como la porosidad efectiva, son importantes en ambos fenómenos de flujo; mientras que otros, como la adherencia del fluido a las paredes del poro, son particularmente relevantes para el flujo hidráulico.

In this work, numerical modeling techniques were used to simulate the flow of electric current and fluid through porous media in order to determine the resistivity factor and permeability, as well as the distribution of electric current density and flow velocity fields. For electric flow modeling, an algorithm based on finite differences was developed, while for hydraulic modeling, a library reported in the literature, based on lattice Boltzmann method, was used. In both modeling schemes, pore-grain boundary conditions were established to model the physical processes exclusively in the pore space. The estimated values of resistivity factor and permeability, as well as porosity, were used to study the correlations between these properties through petrophysical relationships. An expression relating permeability and porosity was proposed and, using an existing relationship between the resistivity factor and the porosity, a direct relation between permeability and resistivity factor was also proposed. The proposed relations were applied to data obtained for numerically generated sphere packs and were found to fit the data better than the most commonly used relationships, especially for high porosities. It was also shown that these petrophysical relationships take the form of the most common relationships known when dealing with low porosities. Modeling data on digital images of a synthetic sphere pack and a dolomite sample showed that the expressions for low porosities are sufficient to fit data from porous media with porosities lower than 0.3 to 0.4. Finally, resistivity factors, permeabilities, petrophysical relationships, and spatial and statistical distributions of flow vector fields were analyzed to compare electrical and hydraulic transport phenomena, finding that some factors, such as the effective porosity, are important in both flow phenomena; whereas some other, such as the pore-wall adherence, are particularly relevant to hidraulic flux.

Física de rocas, modelado numérico, relaciones petrofísicas, fenómenos de transporte, factor de resistividad, permeabilidad, porosidad, tomografía de rocas, campos vectoriales, distribución estadística Rock physics, numerical modelling, petrophysical relations, transport phenomena, resistivity factor, permeability, porosity, rock tomography, vector fields, statistical distribution CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO GEOFÍSICA GEOFÍSICA DE LA MASA SÓLIDA TERRESTRE GEOFÍSICA DE LA MASA SÓLIDA TERRESTRE

Cell carbon content and biomass assessments of dinoflagellates and diatoms in the oceanic ecosystem of the Southern Gulf of Mexico

LORENA PATRICIA LINACRE ROJAS (2021, [Objeto de congreso])

This study assessed the cell carbon content and biomass for genera of dinoflagellates and diatoms in the oceanic ecosystem of the Southern Gulf of Mexico. Carbon content estimates were based on biovolume calculations derived from linear dimension measurements of individual cells and the approximate geometric body shape of each genus. Then, biomass assessments were performed for both groups in two gulf regions (Perdido and Coatzacoalcos) using these carbon content factors and cell abundances. After four seasonal cruises, 11,817 cells of dinoflagellates and 3,412 cells of diatoms were analyzed. Diverse body shapes and cell sizes were observed among 46 dinoflagellate genera and 37 diatom genera. Nano-cells of dinoflagellates (68% <20 μm) and micro-cells of diatoms (77% 20–200 μm, mostly 50–75 μm) were predominant. According to this cell-size structure, on average, diatoms contained 40% more carbon per cell than dinoflagellates. Contrasting carbon content estimates were observed within the genera of both microalgae. Large carbon averages (>10,000 pg C cell-1) were attributed to Gonyaulacal and some occasional genera of dinoflagellates (e.g., Pyrocystis and Noctiluca) and centric diatoms. In contrast, values up to 3 orders of magnitude lower were found for Peridinial and Gymnodinial dinoflagellates and pennate diatoms. Based on these carbon content estimates, which can be considered representative for most of this oceanic ecosystem, seasonal and regional differences were found in the biomass assessments conducted for these functional groups. Overall, dinoflagellates (mostly low-carbon Gymnodinales) had larger depth-integrated biomass than diatoms (mainly rich-carbon centric forms) within the euphotic zone. An exception to it was the late-summer cruise at the Coatzacoalcos region when a surface bloom of centric diatoms was observed in stations influenced by river runoff. This work contributes useful reference information for future ecological studies and models for understanding the biogeochemical functioning of this open-ocean ecosystem. © 2021 Linacre et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Carbon, biomass, Oceanic ecosystem, Southern Gulf of Mexico, Mexico CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Hyperiid amphipods from the Gulf of Ulloa and offshore region, Baja California: The possible role of the gelatinous zooplankton as a transport vector into the coastal shelf waters

Bertha Lavaniegos (2020, [Artículo])

Hyperiid amphipod species from the Gulf of Ulloa, Baja California, and the adjacent region (from the shelf break to 200 km offshore) were analyzed to evaluate diversity and abundances. This productive area supports small-scale commercial fisheries, including sand bass (Paralabrax nebulifer), California spiny lobster (Panulirus interruptus), abalones, clams, and others. Strong coastal upwelling events were observed during summer seasons of the period 2002-2008 between Punta Eugenia and Punta Abreojos. The upwelling plumes at Punta Abreojos are transported southward in slope waters bordering the coastal shelf of the Gulf of Ulloa, contributing to the separation of coastal and oceanic regions, and explain differences in amphipod diversity and abundances between both regions. In the offshore region, the most abundant species were Vibilia armata, Lestrigonus schizogeneios, Primno brevidens, and Eupronoe minuta, similar to previous findings in northern regions of Baja California and southern California. However, abundances of these species were lower (10-30 individuals/1000 m3), only reaching 20-50% of abundance levels reported off northern Baja California. In the coastal shelf of the Gulf of Ulloa, amphipods were virtually absent during 2002, 2003 and 2006. However, during 2004 and 2005, abundances of P. brevidens increased (54 and 20 ind/1000 m3, respectively). Moreover, during the late summer of 2007, abundances of L. schizogeneios, P. brevidens, Lycaea nasuta, Lycaea pulex, and Simorhynchotus antennarius increased considerably (261, 39, 31, 68, 416 ind/1000 m3, respectively), indicating occasional utilization of the coastal shelf by pelagic amphipods. Changes in gelatinous populations (medusae, siphonophores, ctenophores, doliolids, and salps) paralleled changes in hyperiid populations, with highest abundances in 2005-2008 in the coastal shelf. Significant correlations of 17 amphipod species with gelatinous taxa, which are often used as host organisms by hyperiid amphipods, suggest that gelatinous presence enhanced hyperiid abundance and promoted the progression of hyperiid amphipods onto the coastal shelf during parts of the 2002-2008 period. © 2020 Bertha E. Lavaniegos. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

abalone, Amphipoda, article, Baja California, clam, clinical article, Ctenophora, Eugenia, female, fishery, human, human experiment, male, medusa, nonhuman, Panulirus interruptus, plume, summer, zooplankton, Amphipoda, animal, California, ecosystem, CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Diversidad de fauna asociada al sargazo (Sargasum fluitans y Sargasum natans) y su relación con las características físicas del agua en el norte del Caribe mexicano

HELDER ABRAHAM BERZUNZA PASOS (2024, [Tesis de maestría])

CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO HIDROLOGÍA HIDROBIOLOGÍA HIDROBIOLOGÍA