Isolation and characterization of endophytic bacteria associated with roots of jojoba (Simmondsia chinensis (Link) Schneid)

RICARDO VAZQUEZ JUAREZ TANIA ZENTENO SAVIN ENRIQUE MORALES BOJORQUEZ Elvia Pérez Rosales Lilia Alcaráz Meléndez María Esther Puente Eduardo Quiroz Guzmán (2017, [Artículo])

"In this communication, the diversity and beneficial characteristics of endophytic bacteria have been studied in Simmondsia chinensis that has industrial importance because of the quality of its seed oil. Endophytes were isolated (N = 101) from roots of the jojoba plants collected, of which eight were identified by partial sequencing of the 16S rDNA gene. The isolated bacteria were Bacillus sp., Methylobacterium aminovorans, Oceanobacillus kimchi, Rhodococcus pyridinivorans and Streptomyces sp. All isolates had at least one positive feature, characterizing them as potential plant growth promoting bacteria. In this study, R. pyridinivorans and O. kimchi are reported as plant growth promoters."

Endophytic bacteria, plant growth promoters, Simmondsia chinensis, seed oil BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA MICROBIOLOGÍA BACTERIOLOGÍA BACTERIOLOGÍA

Detección de secuencias que codifican enzimas productoras de cianotoxinas, su expresión y relación con las características del agua en cenotes del noreste de la Península de Yucatán

Gerardo Ávila Torres (2023, [Tesis de doctorado])

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA MICROBIOLOGÍA BACTERIOLOGÍA BACTERIOLOGÍA

Evaluación del uso de vibriófagos encapsulados en el alimento para el control de Vibrio parahaemolitycus causante de AHPND en el camarón Penaeus vannamei

Esther Imelda Ponce García (2023, [Tesis de maestría])

"Las enfermedades causadas por bacterias del género Vibrio en el cultivo de camarón son de gran importancia debido a su impacto negativo en la industria acuícola. Estas bacterias pueden causar diversas enfermedades en camarones, como la necrosis hepatopancreática aguda (AHPND). La fagoterapia es una alternativa para el biocontrol de estas bacterias patógenas que presenta importantes ventajas, como la alta especificidad a sus huéspedes, la replicación en el sitio de infección, y la capacidad de infectar a bacterias resistentes a antibióticos. Sin embargo, la estabilidad de los fagos en el sistema de cultivo es una preocupación latente, ya que los fagos presentan una estabilidad limitada en solución y experimentan una caída significativa en el título de fagos durante el procesamiento y almacenamiento. El método de encapsulación de bacteriófagos, un área que aún no se estudia del todo, se presenta como una potencial alternativa para atender esta problemática. En el presente estudio se evaluó la eficacia terapéutica de un cóctel de bacteriófagos (vB_Vp_PvVp05, vB_Vp_PvVp07 y vB_Vp_PvVp11), encapsulados en alginato de sodio comercial y de mediana viscosidad, pectina, carboxilmetilcelulosa, liposomas y liofilizado en pectina como agente de biocontrol de Vibrio parahaemolyticus para su uso en terapias fagicas pasiva y activa. Se observó que el encapsulado en alginato de sodio de mediana viscosidad presentó la mayor liberación de fagos activos y al momento de ser incorporado a alimento para camarón y horneados a 80 – 100°C, se mantuvo una concentración de 1.3 x105 UFP/g después de 100 días de almacenamiento. Para la evaluación de las terapias pasiva y activa se realizó una infección experimental en juveniles de Penaeus vannamei para conocer la efectividad de los encapsulados, utilizando para la terapia pasiva la cepa Vp M0904 y para la activa la cepa Vp M0605. El experimento de terapia pasiva mostró una mortalidad del 80.6% en los camarones a las 48 hpi (p > 0.05) y una concentración de 5 x102 UFC/mL de Vibrio spp. no fermentativos en TCBS. En el caso de la terapia activa no se presentó mortalidades, pero hubo una disminución de la concentración de Vibrio spp. no fermentativos en TCBS con 5.56 x101 UFC/mL a las 48 hpi (p < 0.05) y aumentó la densidad de vibriófagos en 1.4 x102 UFP/mL en el agua de los acuarios (p < 0.05)..."

"Diseases caused by bacteria of the Vibrio genus in shrimp farming are of great importance due to their negative impact on the aquaculture industry. These bacteria can cause various diseases in shrimp, such as acute hepatopancreatic necrosis disease (AHPND). Phage therapy is an alternative for the biocontrol of these pathogenic bacteria, offering significant advantages, including high specificity to their hosts, replication at the infection site, and the ability to infect antibiotic-resistant bacteria. However, the stability of phages in the farming system is a persistent concern, as phages have limited stability in solution and undergo a significant drop in phage titer during processing and storage. The method of bacteriophage encapsulation, an area that is not yet fully explored, emerges as a potential alternative to address this issue. In this study, the therapeutic efficacy of a cocktail of bacteriophages (vB_Vp_PvVp05, vB_Vp_PvVp07, and vB_Vp_PvVp11), encapsulated in commercial medium-viscosity sodium alginate, pectin, carboxymethylcellulose, liposomes, and lyophilized pectin, was evaluated as a biocontrol agent against Vibrio parahaemolyticus for use in passive and active phage therapies. It was observed that encapsulation in medium-viscosity sodium alginate showed the highest release of active phages, maintaining a concentration of 1.3 x 105 PFU/g after 100 days of storage when incorporated into shrimp feed and baked at 80–100°C.For the evaluation of passive and active therapies, an experimental infection was conducted on Penaeus vannamei juveniles to assess the effectiveness of the encapsulated phages. The passive therapy experiment showed a mortality rate of 80.6% in shrimp at 48 hpi (p > 0.05) and a concentration of 5 x 102 CFU/mL of non-fermentative Vibrio spp. on TCBS agar. In the case of active therapy, no mortalities were observed, but there was a decrease in the concentration of non-fermentative Vibrio sp. on TCBS agar to 5.56 x 101 CFU/mL at 48 hpi (p < 0.05), and the density of vibriophages increased to 1.4 x 102 PFU/mL in the aquarium water (p < 0.05). It was determined that passive therapy offered no advantage for the control of Vibrio parahaemolyticus, unlike active therapy, which proved to be effective in controlling this bacterium."

vibriófagos, encapsulado, Penaeus vannamei, terapia activa, terapia pasiva vibriophages, encapsulated, active therapy, passive therapy BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA MICROBIOLOGÍA BACTERIÓFAGOS BACTERIÓFAGOS

Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California

Sabah Ul-Hasan (2019, [Artículo])

Microbial communities control numerous biogeochemical processes critical for ecosystem function and health. Most analyses of coastal microbial communities focus on the characterization of bacteria present in either sediment or seawater, with fewer studies characterizing both sediment and seawater together at a given site, and even fewer studies including information about non-bacterial microbial communities. As a result, knowledge about the ecological patterns of microbial biodiversity across domains and habitats in coastal communities is limited–despite the fact that archaea, bacteria, and microbial eukaryotes are present and known to interact in coastal habitats. To better understand microbial biodiversity patterns in coastal ecosystems, we characterized sediment and seawater microbial communities for three sites along the coastline of Puerto Nuevo, Baja California, Mexico using both 16S and 18S rRNA gene amplicon sequencing. We found that sediment hosted approximately 500-fold more operational taxonomic units (OTUs) for bacteria, archaea, and microbial eukaryotes than seawater (p < 0.001). Distinct phyla were found in sediment versus seawater samples. Of the top ten most abundant classes, Cytophagia (bacterial) and Chromadorea (eukaryal) were specific to the sediment environment, whereas Cyanobacteria and Bacteroidia (bacterial) and Chlorophyceae (eukaryal) were specific to the seawater environment. A total of 47 unique genera were observed to comprise the core taxa community across environment types and sites. No archaeal taxa were observed as part of either the abundant or core taxa. No significant differences were observed for sediment community composition across domains or between sites. For seawater, the bacterial and archaeal community composition was statistically different for the Major Outlet site (p < 0.05), the site closest to a residential area, and the eukaryal community composition was statistically different between all sites (p < 0.05). Our findings highlight the distinct patterns and spatial heterogeneity in microbial communities of a coastal region in Baja California, Mexico. This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOFÍSICA BIOFÍSICA

EVALUACIÓN DE LA ACTIVIDAD Y EXPRESIÓN GÉNICA DE ENZIMAS ANTIOXIDANTES (SOD, GPX, GST, GR y CAT) COMO BIOMARCADORES DE EXPOSICIÓN A FTALATOS EN CULTIVO CELULAR

Elizabeth Brassea Pérez (2023, [Tesis de doctorado])

"El plastificante bis(2-etilhexilo) ftalato (DEHP) altera el equilibrio entre la producción de especies reactivas de oxígeno y las defensas antioxidantes. A pesar de la información disponible sobre los efectos tóxicos del DEHP en organismos modelo, la respuesta celular al DEHP en especies naturalmente adaptadas para tolerar el estrés oxidativo aún no se ha explorado. Los mamíferos marinos están naturalmente adaptados para hacer frente al estrés oxidativo derivado de la isquemia/reperfusión inducida por el buceo. El objetivo de este estudio fue comparar los cambios en los indicadores de estrés oxidativo asociados al DEHP en células de músculo esquelético de humanos (Homo sapiens sapiens) y lobos marinos de California (Zalophus californianus). Se recolectaron muestras de músculo abdominal de mujeres sanas sometidas a cesárea programada, tras obtener su consentimiento informado. Las muestras de músculo de lobo marino se obtuvieron de crías encontradas recientemente muertas en la colonia de Los Islotes, Golfo de California. Las células de músculo esquelético se aislaron y cultivaron en condiciones estándar. Las células se dividieron en dos grupos. Un grupo fue expuesto a DEHP (1 mM) durante 13 días (n=25; exposición), el otro grupo se mantuvo bajo condiciones control, es decir sin DEHP añadido (n=25; control). Se midió la producción de radical superóxido (O2•-), el daño oxidativo, la actividad de enzimas antioxidantes y la expresión génica mediante métodos espectrofotométricos y RT-qPCR. En células expuestas al DEHP la producción de O2•- y la actividad de superóxido dismutasa (SOD) fueron mayores que en las células bajo condiciones control para ambas especies. La actividad de glutatión S-transferasa (GST) y los niveles de carbonilos proteicos (PC) aumentaron significativamente en las células humanas expuestas a DEHP, y no significativamente en las células de lobo marino. Por el contrario, las actividades de glutatión peroxidasa (GPx) y catalasa (CAT) aumentaron significativamente en las células de lobo marino, pero no en las de humano expuestas a DEHP. Se observó una expresión diferencial de los genes implicados en el metabolismo redox entre las células control y expuestas a DEHP y entre especies. Los patrones de expresión de 26 y 19 genes fueron significativamente diferentes en las células humanas y de lobo marino, respectivamente, después de la exposición a DEHP. En las células humanas, la expresión de la GST1 microsomal y la GST (κ, μ, θ, ω y ᴢ) fue mayor,

"The plasticizer bis (2-ethylhexyl) phthalate (DEHP) dysregulates the balance between reactive oxygen species production and antioxidant defenses. Despite the information available on DEHP’s hazardous effects in model species, the cellular response to DEHP in organisms naturally adapted to tolerate oxidative stress remains unexplored. Marine mammals are naturally adapted to cope with oxidative stress derived from diving-induced ischemia/reperfusion. The objective of this study was to compare changes in oxidative stress indicators induced by DEHP in human (Homo sapiens sapiens) and California sea lion (Zalophus californianus) skeletal muscle cells. Abdominal muscle samples were collected from healthy women undergoing planned cesarean surgery at full term after obtaining informed consent. Sea lion muscle samples were obtained from recently deceased pups at Los Islotes rookery, Gulf of California. Skeletal muscle cells were isolated and cultured under standard conditions. Cells were divided into two groups. One group was exposed to 1 mM DEHP for 13 days (n=25; treatment), and the other served as a control (n=25; no DEHP). Superoxide radical (O2•-) production, oxidative damage, antioxidant enzyme activities and gene expression were measured using spectrophotometric methods and RT-qPCR. DEHP exposure increased O2•- production and superoxide dismutase (SOD) activity in both species. While the activity of glutathione S-transferase (GST) and protein carbonyls (PC) levels significantly increased in human cells, these indicators showed a non-significant elevation in sea lion cells. In contrast, glutathione peroxidase (GPx) and catalase (CAT) activities increased significantly in sea lion but not in human cultures exposed to DEHP. Genes involved in redox metabolism showed differential expression between treatments and species. DEHP exposure led to widespread modifications in gene expression patterns, with 26 and 19 differentially expressed genes in human and sea lion cells, respectively. In human cells, DEHP increased GST1 and GST (κ, μ, θ, ω, and ᴢ), while suppressing 8-oxoguanine DNA glycosylase (OGG1), CAT, GR, and nuclear factor erythroid 2-related factor 2 (NRF2) expression, suggesting increased oxidative stress and phase two detoxification processes. In contrast, DEHP increased OGG1, NRF2, GPx2 and SOD3 expression, suggesting that DEHP activates antioxidant defenses in sea lion cells, potentially contributing to maintain redox homeostasis and avoid oxidative...

Contaminantes emergentes, enzimas antioxidantes, estrés oxidativo, mamíferos, Una Salud Antioxidant enzymes, emerging pollutants, mammals, One Health, oxidative stress BIOLOGÍA Y QUÍMICA QUÍMICA BIOQUÍMICA ENZIMOLOGIA ENZIMOLOGIA

Indicadores de estrés y desempeño biológico de juveniles de lobina rayada (Morone saxatilis) en agua marina: efecto de la densidad de cultivo y color del tanque

Stress indicators and biological performance of striped bass (Morone saxatilis) juvenile in seawater: effect stock density and tank color

DENISE ENCARNACION MAYORAL NORIEGA (2023, [Tesis de maestría])

Existen factores ambientales de naturaleza física, química o biológica que afectan directamente la alimentación de los peces. Por ejemplo, las altas densidades de cultivo pueden generar estrés en los organismos, resultando en la merma del consumo de alimento y por ende su crecimiento. Sin embargo, algunas especies toleran altas densidades formando un grupo o cardumen que les confiere un mejor desempeño. Otro factor que afecta el comportamiento de algunas especies es la coloración de los tanques de cultivo; demostrando la necesidad de utilizar tanques con un entorno físico adecuado para la especie a cultivar. Actualmente, M. saxatilis se produce en tanques en laboratorio y se engorda en jaulas marinas en Baja California; así que existe un gran interés por mejorar su crecimiento y eficiencia alimenticia. Por ello, el objetivo de esta investigación fue evaluar tres densidades de cultivo (alta: 6.2 kg·m-3, media: 3.1 kg·m-3 y baja: 1.5 kg·m-3) y dos colores de tanque (azul celeste y negro) en el crecimiento, supervivencia, utilización del alimento, índices corporales y concentración de cortisol y glucosa de juveniles de lobina rayada en agua marina para su mantenimiento en laboratorio durante nueve semanas. Los resultados demostraron que los organismos obtuvieron el mayor crecimiento en peso en la densidad media, indistintamente del color del tanque. Asimismo, la densidad afectó significativamente los índices hepatosomático y liposomático, ya que disminuyeron conforme aumentó la densidad. El color del tanque influyó de manera importante en el consumo de alimento (azules: 37.4 ± 1.9 g·pez-1; negros: 35.9 ± 2.0 g·pez-1). La interacción de los factores afectó la TCE, TCA y TEP. Las concentraciones de cortisol (81.8 ± 22.5 ng·ml-1) y glucosa (83.2 ± 11.4 mg·100 ml-1) fueron similares en todos los tratamientos y relativamente bajas para la especie. En conclusión, se logró elucidar bajo qué condiciones de cultivo en laboratorio los organismos lograron superar los factores de estrés sin comprometer su crecimiento y supervivencia, reflejándose en un mejor desempeño biológico. Se recomienda utilizar tanques azules o negros con densidades iniciales de 4.2 kg·m-3 o 233 peces·m-3 para el cultivo de juveniles de M. saxatilis en agua salada bajo condiciones de laboratorio.

Environmental factors of a physical, chemical or biological nature such as high stocking densities can directly affect fish feeding and generate stress in organisms, resulting in a decrease in food intake and therefore growth. However, some species tolerate high densities, forming a group or shoal resulting in better overall performance. Another factor that influences the behavior of some species is the color of the culture tank; warranting the need to use tanks with a physical environment suitable for the species to be cultivated. Currently, striped bass are produced in tank-based hatcheries to be socked in sea cages for growout in Baja California. Thus, there is interest in improving their growth rate and feed efficiency under laboratory conditions. Therefore, the objective of this research was to evaluate the effect of three stocking densities (high: 6.2 kg m-3, medium: 3.1 kg m-3 and low: 1.5 kg m-3) and two tank colors (light blue and black) on the biological performance (growth, survival, food utilization), somatic indices and fish stress using the concentration of cortisol and glucose in blood serum as response variables of juvenile striped bass cultured in seawater for nine weeks. The results showed that the organisms had greater growth in terms of final weight when they were cultured at the medium stocking density, regardless of tank color. Likewise, density had a significant effect on hepatosomatic and liposomatic indices, with a tendency to decrease as density increased. The color of the tank significantly influenced the food consumption (blues: 37.4 ± 1.9 g·fish-1; blacks: 35.9 ± 2.0 g·fish-1). The interaction of the factors influenced TCE, TCA and TEP. The concentrations of cortisol (81.8 ± 22.5 ng·ml-1) and glucose (83.2 ± 11.4 mg·100 ml-1) were similar in all treatments indicating low fish stress. In conclusion, it was possible to elucidate under which laboratory culture conditions the organisms were able to overcome the stress factors without compromising their growth and survival; reflected in better biological performance. A stocking density of 4.2 kg m-3 o 233 fish·m-3 for M. saxatilis juvenile reared in saltwater under laboratory culture conditions is recommended.

lobina rayada, densidad cultivo, color tanque, estrés, crecimiento striped bass, stocking density, tank color, stress, growth CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS PECES Y FAUNA SILVESTRE PISCICULTURA PISCICULTURA

EFECTOS DE LA CONFORMACIÓN ESTRUCTURAL DE UN SUBSTRATO EN LA EMISIÓN DE FLUORESCENCIA POLARIZADA: ANÁLISIS DE FACTIBILIDAD TÉCNICA PARA EL DESARROLLO DE UN SENSOR ÓPTICO CON APLICACIONES BIOMÉDICAS

Danay Hernández (2023, [Tesis de doctorado])

"La celulosa, localizada en las paredes celulares de las plantas, es uno de los polímeros más prevalentes en la naturaleza y puede ser obtenida mediante diversos métodos, incluida la síntesis de cierto tipo de bacterias. Este polímero da origen a un material específico denominado nanocelulosa, clasificado según su estructura en nanocristales (CNC, por sus siglas en inglés, Cellulose Nano-Crystals), nanofibras (CNF, por sus siglas en inglés, Cellulose Nano-Fibers) y celulosa bacteriana (BC, por sus siglas en inglés, Bacterial Cellulose). En el ámbito biomédico, los nanocristales de celulosa han tenido un impacto significativo debido a su biocompatibilidad y sostenibilidad, destacándose en aplicaciones como la fabricación de apósitos para el tratamiento y monitoreo de la cicatrización de heridas, un proceso que generalmente se evalúa objetivamente por especialistas."

Celulosa Nanocristales Biosensores Luz polarizada Fluorescencia Cristal líquido CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA

Innovative experimental plant to improve coffee processing

IVAN TOVAR ESTRADA Juan Francisco Cedano Lezcano EMANUEL VARGUEZ CALCANEO ESTEBAN GUZMAN RODRIGUEZ (2023, [Artículo])

In Mexico, coffee production refers to a process with traditional processing practices that combine rustic and semi-mechanized activities, where quality is not controlled, placing it in the category of conventional coffee. In recent years worldwide, the demand for high-quality coffee has increased and in order to offer this model, it is necessary to standardize the processing and transformation processes that increase the quality and value of the coffee. In order to exploit the different capacities in our country, it is necessary to design an innovative experimental plant for the processing of the primary coffee beneficiary, which is capable of adapting to the processes known by the producers, through the instruments and machinery the plant will provide The producer has control over the variables that influence taking advantage of the organoleptic properties of the coffee bean prior to harvest. The plant allows experimentation and obtaining controlled results according to the primary processing method to be applied. The development of the experimental plant has three iterative design cycles; 1) concept design, in which the various processes and methods investigated are evaluated to seek their homogenization with the help of instruments for monitoring and control, 2) prototype design, which is carried out with the help of 2D platforms and 3D modeling, that allow visualizing the location of the different equipment, as well as the flows of the different primary processing processes that the producer wishes to apply, and 3) innovation design, in which the products and services allow the value chain to be improved through processes instruments, data control and new techniques. For the development and maintenance of the experimental plant, it is necessary to link the entities that make up the quadruple helix; companies, government, society and public centers and institutes of higher education. In order to promote teamwork, collaboration and the exchange of ideas to strengthen, sustain and enrich the innovation ecosystem created through the experimental plant.

Benefited Specialty coffees INGENIERÍA Y TECNOLOGÍA CIENCIAS TECNOLÓGICAS OTRAS ESPECIALIDADES TECNOLÓGICAS OTRAS OTRAS

The pedestrian trajectories derived from the barriers of the public space

Amanda Casillas Ana Victoria Casillas Zapata (2023, [Artículo, Artículo])

Walking behavior respond to various factors, both internal and external, the first one is linked to the pedestrian's motivation, and the second one is linked to the opportunity offered by the built environment. The public space in the cities represents the main articulator of pedestrian movements, allowing flexible or fixed types of trips to be carried out. Therefore, those urban spaces that are detached from the network conformed by the pedestrian infrastructure could limit accessibility and alter the paths of travel. This study addresses the cases of three neighborhood parks that in recent years have had their configuration transformed by closing their perimeters in a partial or total way; the main objective of this study is to identify the types of pedestrian trajectories that derive from these barriers, as for those who move from within the neighborhoods and those who move from outside. These trajectories were analyzed under a qualitative approach and a descriptive scope. This allow us to determine that the parks, according to their disposition, have the potential to attract or repel the pedestrian movement, whether they were used as a destination or a connection place for displacement. In this way, it was possible to determine that the pedestrian trajectories are conditioned by the reduced permeability of these spaces.

Pedestrian mobility Public space Parks Barriers movilidad peatonal espacio público parques barreras conectividad HUMANIDADES Y CIENCIAS DE LA CONDUCTA HUMANIDADES Y CIENCIAS DE LA CONDUCTA

The spatial control of migrants on the Chihuahua border

EDGAR ABEL CASTRO (2023, [Artículo, Artículo])

This article tries to link the immigration policies of the United States and Mexico with the narrative developed by Michel Foucault. It shows how racism is the axis on which the State of biopower exercises its claims and its effects of power on bodies and on life. Thus, the current political rationality goes through the management of the living body of people, their health, and their spatiality. This principle extends to the homicidal function of the State. Two events that occurred on the Chihuahua border demonstrate this.

migrant control Foucault border racism migrante frontera racismo HUMANIDADES Y CIENCIAS DE LA CONDUCTA HUMANIDADES Y CIENCIAS DE LA CONDUCTA