Rapid effects of marine reserves via larval dispersal

Richard Cudney Bueno (2009, [Artículo])

Marine reserves have been advocated worldwide as conservation and fishery management tools. It is argued that they can protect ecosystems and also benefit fisheries via density-dependent spillover of adults and enhanced larval dispersal into fishing areas. However, while evidence has shown that marine reserves can meet conservation targets, their effects on fisheries are less understood. In particular, the basic question of if and over what temporal and spatial scales reserves can benefit fished populations via larval dispersal remains unanswered. We tested predictions of a larval transport model for a marine reserve network in the Gulf of California, Mexico, via field oceanography and repeated density counts of recently settled juvenile commercial mollusks before and after reserve establishment. We show that local retention of larvae within a reserve network can take place with enhanced, but spatially-explicit, recruitment to local fisheries. Enhancement occurred rapidly (2 yrs), with up to a three-fold increase in density of juveniles found in fished areas at the downstream edge of the reserve network, but other fishing areas within the network were unaffected. These findings were consistent with our model predictions. Our findings underscore the potential benefits of protecting larval sources and show that enhancement in recruitment can be manifested rapidly. However, benefits can be markedly variable within a local seascape. Hence, effects of marine reserve networks, positive or negative, may be overlooked when only focusing on overall responses and not considering finer spatially-explicit responses within a reserve network and its adjacent fishing grounds. Our results therefore call for future research on marine reserves that addresses this variability in order to help frame appropriate scenarios for the spatial management scales of interest. © 2009 Cudney-Bueno et al.

article, environmental monitoring, fishery, larva, marine environment, marine species, Mexico, mollusc, nonhuman, oceanography, prediction, animal, biology, environmental protection, food industry, geography, growth, development and aging, larva, met CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Variability of Microcirculation Detected by Blood Pulsation Imaging

Alexei Kamshilin (2013, [Artículo])

The non-invasive assessment of blood flow is invaluable for the diagnostic and monitoring treatment of numerous vascular and neurological diseases. We developed a non-invasive and non-contact method of blood pulsation imaging capable of visualizing and monitoring of the two-dimensional distribution of two key parameters of peripheral blood flow: the blood pulsation amplitude and blood pulsation phase. The method is based on the photoplethysmographic imaging in the reflection mode. In contrast with previous imaging systems we use new algorithm for data processing which allows two dimensional mapping of blood pulsations in large object's areas after every cardiac cycle. In our study we carried out the occlusion test of the arm and found (i) the extensive variability of 2D-distribution of blood pulsation amplitude from one cardiac cycle to another, and (ii) existence of the adjacent spots to which the blood is asynchronously supplied. These observations show that the method can be used for studying of the multicomponent regulation of peripheral blood circulation. The proposed technique is technologically simple and cost-effective, which makes it applicable for monitoring the peripheral microcirculation in clinical settings for example, in diagnostics or testing the efficiency of new medicines. © 2013 Kamshilin et al.

algorithm, article, blood analysis, heart cycle, human, human experiment, image analysis, imaging system, male, microcirculation, peripheral circulation, photoelectric plethysmography, process development, Algorithms, Diagnostic Imaging, Diagnostic T CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA MATEMÁTICAS ANÁLISIS NUMÉRICO ANÁLISIS NUMÉRICO

A simple extension to the CMASA method for the prediction of catalytic residues in the presence of single point mutations

David Israel Flores Granados (2014, [Artículo])

The automatic identification of catalytic residues still remains an important challenge in structural bioinformatics. Sequence-based methods are good alternatives when the query shares a high percentage of identity with a well-annotated enzyme. However, when the homology is not apparent, which occurs with many structures from the structural genome initiative, structural information should be exploited. A local structural comparison is preferred to a global structural comparison when predicting functional residues. CMASA is a recently proposed method for predicting catalytic residues based on a local structure comparison. The method achieves high accuracy and a high value for the Matthews correlation coefficient. However, point substitutions or a lack of relevant data strongly affect the performance of the method. In the present study, we propose a simple extension to the CMASA method to overcome this difficulty. Extensive computational experiments are shown as proof of concept instances, as well as for a few real cases. The results show that the extension performs well when the catalytic site contains mutated residues or when some residues are missing. The proposed modification could correctly predict the catalytic residues of a mutant thymidylate synthase, 1EVF. It also successfully predicted the catalytic residues for 3HRC despite the lack of information for a relevant side chain atom in the PDB file. © 2014 Flores et al.

1UU9 protein, 3HRC protein, protein, thymidylate synthase, unclassified drug, protein kinase, thymidylate synthase, accuracy, algorithm, Article, CMASA, CMASA Substitution Matrix, Contact Matrix Average Deviation, controlled study, correlation coeffi CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA MATEMÁTICAS ANÁLISIS NUMÉRICO ANÁLISIS NUMÉRICO

Assessing the Response of Nematode Communities to Climate Change-Driven Warming: A Microcosm Experiment

RUTH GINGOLD WERMUTH (2013, [Artículo])

Biodiversity has diminished over the past decades with climate change being among the main responsible factors. One consequence of climate change is the increase in sea surface temperature, which, together with long exposure periods in intertidal areas, may exceed the tolerance level of benthic organisms. Benthic communities may suffer structural changes due to the loss of species or functional groups, putting ecological services at risk. In sandy beaches, free-living marine nematodes usually are the most abundant and diverse group of intertidal meiofauna, playing an important role in the benthic food web. While apparently many functionally similar nematode species co-exist temporally and spatially, experimental results on selected bacterivore species suggest no functional overlap, but rather an idiosyncratic contribution to ecosystem functioning. However, we hypothesize that functional redundancy is more likely to observe when taking into account the entire diversity of natural assemblages. We conducted a microcosm experiment with two natural communities to assess their stress response to elevated temperature. The two communities differed in diversity (high [HD] vs. low [LD]) and environmental origin (harsh vs. moderate conditions). We assessed their stress resistance to the experimental treatment in terms of species and diversity changes, and their function in terms of abundance, biomass, and trophic diversity. According to the Insurance Hypothesis, we hypothesized that the HD community would cope better with the stressful treatment due to species functional overlap, whereas the LD community functioning would benefit from species better adapted to harsh conditions. Our results indicate no evidence of functional redundancy in the studied nematofaunal communities. The species loss was more prominent and size specific in the HD; large predators and omnivores were lost, which may have important consequences for the benthic food web. Yet, we found evidence for alternative diversity-ecosystem functioning relationships, such as the Rivets and the Idiosyncrasy Model. © 2013 Gingold et al.

aquaculture, article, bacterivore, benthos, biodiversity, biomass, climate, community dynamics, controlled study, ecosystem, environmental temperature, microcosm, nematode, nonhuman, population abundance, species diversity, species richness, taxonomy CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Molecular characterization of divergent isolates of Citrus bent leaf viroid (CBLVd) from citrus cultivars of Punjab, Pakistan

Abdelfattah DABABAT Yong Suk Chung (2023, [Artículo])

Biological Indexing Sequencing Analysis Citrus Orchards CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA PHYLOGENETIC ANALYSIS CITRUS RNA DNA

Deterministic Brownian-like Motion: Electronic Approach

JOSE LUIS ECHENAUSIA MONROY Eric Campos Cantón Rider Jaimes Reátegui JUAN HUGO GARCIA LOPEZ GUILLERMO HUERTA CUELLAR (2022, [Artículo])

"Brownian motion is a dynamic behavior with random changes over time (stochastic) that occurs in many vital functions related to fluid environments, stock behavior, or even renewable energy generation. In this paper, we present a circuit implementation that reproduces Brownian motion based on a fully deterministic set of differential equations. The dynamics of the electronic circuit are characterized using four well-known metrics of Brownian motion, namely: (i) Detrended Fluctuation Analysis (DFA), (ii) power law in the power spectrum, (iii) normal probability distribution, and (iv) Mean Square Displacement (MSD); where traditional Brownian motion exhibits linear time growth of the MSD, a Gaussian distribution, a −2 power law of the frequency spectrum, and DFA values close to 1.5. The obtained results show that for a certain combination of values in the deterministic model, the dynamics in the electronic circuit are consistent with the expectations for a stochastic Brownian behavior. The presented electronic circuit improves the study of Brownian behavior by eliminating the stochastic component, allowing reproducibility of the results through fully deterministic equations, and enabling the generation of physical signals (analog electronic signals) with Brownian-like properties with potential applications in fields such as medicine, economics, genetics, and communications, to name a few."

Brownian motion Deterministic Brownian motion DFA analysis Statistical analysis Electronic circuit Electronic implementation CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA FÍSICA ELECTRÓNICA ELECTRÓNICA

RNAseq of diverse spring wheat cultivars released during last 110 years

awais rasheed Huihui Li (2023, [Artículo])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA RNA SEQUENCE SPRING WHEAT ROOT ARCHITECTURE GENES

Multiple approaches to understanding the taxonomic status of an enigmatic new scorpion species of the genus Tityus (Buthidae) from the biogeographic island of Paraje Tres Cerros (Argentina)

Andres Alejandro Ojanguren Affilastro (2017, [Artículo])

Tityus curupi n. sp., belonging to the bolivianus complex, is described from the biogeographically distinct area of Paraje Tres Cerros in north-eastern Argentina. We also present a molecular species delimitation analysis between Tityus curupi n. sp. and its sister species Tityus uruguayensis Borelli 1901 to confirm species integrity. Furthermore, a cytogenetic analysis is presented for these two species which contain different multivalent associations in meiosis, as a consequence of chromosome rearrangements, and the highest chromosome numbers in the genus. © 2017 Ojanguren-Affilastro et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Argentina, chromosome analysis, chromosome rearrangement, genus, human, meiosis, sister, species, anatomy and histology, animal, Argentina, chemistry, chromosome, classification, ecosystem, fluorescence in situ hybridization, genetics, geography, isl BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA DE INSECTOS (ENTOMOLOGÍA) BIOLOGÍA DE INSECTOS (ENTOMOLOGÍA)

miRNAs contained in extracellular vesicles cargo contribute to the progression of idiopathic pulmonary fibrosis: an in vitro aproach

JOVITO CESAR SANTOS ALVAREZ JUAN MANUEL VELAZQUEZ ENRIQUEZ ROSENDO GARCÍA CARRILLO CESAR RODRIGUEZ BEAS ALMA AURORA RAMIREZ HERNANDEZ EDILBURGA REYES JIMENEZ KARINA GONZÁLEZ GARCÍA ARMANDO LOPEZ MARTINEZ LAURA PEREZ CAMPOS MAYORAL SERGIO ROBERTO AGUILAR RUIZ MARIA DE LOS ANGELES ROMERO TLALOLINI HONORIO TORRES AGUILAR LUIS ALBERTO CASTRO SANCHEZ JAIME ARELLANES ROBLEDO VERONICA ROCIO VASQUEZ GARZON RAFAEL BALTIERREZ HOYOS (2022, [Artículo])

Idiopathic pulmonary fibrosis (IPF) is a chronic, progressive lung disease. Lesions in the lung epithelium cause alterations in the microenvironment that promote fibroblast accumulation. Extracellular vesicles (EVs) transport proteins, lipids, and nucleic acids, such as microRNAs (miRNAs). The aim of this study was to characterize the differentially expressed miRNAs in the cargo of EVs obtained from the LL97 and LL29 fibroblast cell lines isolated from IPF lungs versus those derived from the CCD19 fibroblast cell line isolated from a healthy donors. We characterized EVs by ultracentrifugation, Western blotting, and dynamic light scattering. We identified miRNAs by small RNA-seq, a total of 1144 miRNAs, of which

1027 were known miRNAs; interestingly, 117 miRNAs were novel. Differential expression analysis showed that 77 miRNAs were upregulated and 68 were downregulated. In addition, pathway enrichment analyses from the Gene Ontology and Kyoto Encyclopedia of Genomes identified several miRNA target genes in the categories, cell proliferation, regulation of apoptosis, pathways in cancer, and proteoglycans in cancer. Our data reveal that miRNAs contained in EVs cargo could be helpful as biomarkers for fibrogenesis, diagnosis, and therapeutic intervention of IPF.

MEDICINA Y CIENCIAS DE LA SALUD Idiopathic pulmonary fibrosis Extracellular vesicles Fibroblasts Small-RNA seq

Soil analysis and integrated nutrient management

Isaiah Nyagumbo (2021, [Objeto de congreso])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA SOIL ANALYSIS NUTRIENT MANAGEMENT SOIL FERTILITY