Genomic selection: A tool for accelerating the efficiency of molecular breeding for development of climate-resilient crops

UTTAM KUMAR Rajeev Ranjan Kumar Philomin Juliana Sundeep Kumar (2022, [Artículo])

Genomic Selection Single-Trait Genomic Selection Multi-Trait Genomic Selection Genomic Estimated Breeding Value Climate-Resilient Crops CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA MARKER-ASSISTED SELECTION CLIMATE CHANGE STRESS CLIMATE RESILIENCE CROPS ABIOTIC STRESS BIOTIC STRESS

Editorial: Genome wide association studies and genomic selection for crop improvement in the era of Big Data

Alison Bentley Charles Chen Nunzio D'Agostino (2022, [Artículo])

Allele Mining High-Throughput Phenotyping Genomic Estimated Breeding Value CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CROP IMPROVEMENT DNA CHROMOSOME MAPPING GENETIC LINKAGE GENOMES GENOTYPING GERMINATION HEAT STRESS QUALITY CONTROL SINGLE NUCLEOTIDE POLYMORPHISM TRITICUM AESTIVUM GENETIC DIVERSITY (AS RESOURCE) HIGH-THROUGHPUT SEQUENCING

Agricultural value chains in Sudan: an annotated bibliography

Hugo De Groote Paswel Marenya (2023, [Libro])

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA AGRICULTURAL VALUE CHAINS CASH CROPS FOOD CROPS LIVESTOCK SOCIOECONOMIC ASPECTS GENDER SOCIAL INCLUSION POSTHARVEST LOSSES BIBLIOGRAPHIES

Análisis isotópico en plumas del Charrán mínimo (Sternula antillarum) para inferir su ecología trófica

Isotope analysis in feathers of the Least Tern (Sternula antillarum) to infer its trophic ecology

Andehui Danay Morales Flores (2024, [Tesis de maestría])

El análisis isotópico de plumas primarias utilizando las razones isotópicas δ13C y δ15N permitió estimar la amplitud y superposición del nicho trófico de los conjuntos de las colonias reproductivas de adultos y volantones del charrán mínimo. Se infirió la amplitud del nicho por medio del área de la elipse estándar estimada por métodos Bayesianos (SEAB), se encontró que existen diferencias entre el nicho trófico de adultos y volantones, pues los adultos tienen valores de la media SEAB de 16.3‰2 hasta 28.4‰2 y los volantones de 44.8‰2 hasta 75.5‰2, esto podría ser debido a diferencias en cuanto a las presas seleccionadas y la ubicación geográfica de los adultos durante la muda de las primarias. Por otro lado, la superposición del nicho indicó la similitud entre los adultos de diferentes colonias, por lo cual, se consideró que los adultos de algunas colonias podrían compartir un sitio de invernada o bien la temporalidad en la muda de las primarias. Además, se cumplió con el objetivo de caracterizar la variabilidad de las firmas isotópicas de carbono y nitrógeno durante el crecimiento secuencial de las plumas primarias por medio de los modelos aditivos generalizados y se observó la variabilidad entre las primarias utilizando las anomalías respecto a la media local de cada colonia, lo cual permitió diferenciar estrategias de alimentación específicas para ciertos conjuntos y la variabilidad en la dieta. La búsqueda bibliográfica de los sitios potenciales de migración en invierno más los mapas de gradientes isotópicos de δ13C permitió determinar que el Océano Pacífico Oriental Tropical es la región geográfica relacionada con la distribución δ13C en plumas primarias del charrán mínimo y es el sitio más probable de invernada.

The isotopic analysis of primary feathers using the isotopic ratios of δ13C and δ15N allowed the estimation of the breadth and overlap of the trophic niche of adult and fledgling least terns. Niche breadth was inferred through the standard ellipse area (SEAB) estimated by Bayesian methods. We found differences between the trophic niche of adults and fledglings, as adults presented mean SEAB values from 16.3‰2 to 28.4‰2 and fledglings from 44.8‰2 to 75.5‰2. This could be due to differences in the prey selected and the geographical location of the adults during the molt of the primaries. The overlap of these values among adults indicates similarity in prey selection and location between the adults of different colonies. Therefore, it was considered that the adults of some colonies could share a wintering site during the period of molt of the primary feathers. We characterized the variability of carbon and nitrogen isotopic signatures during the sequential growth of primary feathers through generalized additive models and the variability between primaries using the anomalies of these signatures and the local mean for each colony. This allowed us to differentiate specific feeding strategies of individual least terns and the variability in their diet. The bibliographic search for potential migration and wintering sites found published maps of δ13C isotopic gradients in the Tropical Eastern Pacific Ocean that correspond to the δ13C distribution in primary feathers of the least tern, indicating a potential wintering area for this species.

isótopos, carbono, nitrógeno, ave marina, ecología trófica isotopes, seabird, nitrogen, carbon, trophic ecology BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) ECOLOGÍA VEGETAL ECOLOGÍA VEGETAL

Grazing behavior of New Zeland holstein cows with access to shade

Rodolfo Ramírez-Valverde Juan Burgueño (2022, [Artículo])

Temperature and Humidity Index Artificial Shade CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA SHADING DAIRY COWS SOLAR RADIATION

Nitrogen use efficiency and genotype-by-environment interaction in durum wheat genotypes under varying nitrogen supply

Tesfaye Geleta Aga Bekele Abeyo (2024, [Artículo])

Straw Nitrogen Uptake Nitrogen Harvest Index CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA NITROGEN-USE EFFICIENCY STRAW GENOTYPE ENVIRONMENT INTERACTION HARD WHEAT

Changes in soil organic carbon pools after 15 years of Conservation Agriculture in rice (Oryza sativa)-wheat (Triticum aestivum) cropping system of eastern Indo-Gangetic plains

C.M. Parihar Mahesh Gathala ML JAT (2023, [Artículo])

The present study was carried out at Dr. Rajendra Prasad Central Agricultural University, Samastipur, Bihar during 2021-2023 to focus on examining alterations in SOC pools resulting from conservation agriculture (CA) practices in R-W system in the eastern IGP, following the collection of soil samples from a long-term trial that was initiated in rainy (kharif) season 2006. The trial included eight combinations, namely: conventional tilled rice (Oryza sativa L.) and wheat (Triticum aestivum L.) (CTR-CTW); CT rice and zero till wheat (CTR-ZTW); direct seeded rice (DSR) and wheat on permanent raised beds (PBDSR-PBW); ZTDSR and CT Wheat (ZTDSR-CTW); ZTDSR and ZT wheat without residue (ZTDSR-ZTW-R); ZTDSR-ZT wheat with residue (ZTDSR-ZTW +R); unpuddled transplanted riceZTW (UpTR-ZTW) and ZTDSR-sesbania brown manure-ZTW (ZTDSR-S-ZTW). Results revealed that implementing zero tillage (ZT) combined with residue retention in rice and wheat cultivation led to enhanced levels of soil organic carbon (SOC) across all four fractions, namely very labile (CVL), labile (CL), less labile (CLL), and non-labile (CNL), in comparison to the continuous and rotational tillage practices. The tillage and residue management options significantly affected the lability index (LI) and C pool index (CPI), with zero-tillage and residue retention leading to lower LI and higher CPI values. The management practices significantly affected the C management index (CMI), with zero-tillage and residue retention showing the highest CMI values. Findings showed the potential of CA practices for enhancing soil C quality as well as C sequestration in soil of the Eastern IGP of India.

Carbon Management Index Soil Organic Carbon Fractions CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CONSERVATION AGRICULTURE SOIL ORGANIC CARBON ZERO TILLAGE

Metabolites Profile of Extracts and Fractions of Erythroxylum mexicanum Kunth by UHPLC-QTOF-MS/MS and its Antibacterial, Cytotoxic and Nitric Oxide Inhibitory Activities

LAURA PATRICIA ALVAREZ BERBER MARIA DE LOS ANGELES RAMIREZ CISNEROS (2024, [Artículo])

The present study shows the untargeted metabolite profiling and in vitro antibacterial, cytotoxic, and nitric oxide (NO) inhibitory activities of the methanolic leaves extract (MLE) and methanolic stem extract (MSE) of Erythroxylum mexicanum, as well as the fractions from MSE. Using ultra-high performance liquid chromatography/quadrupole time-of-flight tandem mass spectrometry (UHPLC-QTOF-MS/MS), a total of 70 metabolites were identified; mainly alkaloids in the MLE, while the MSE showed a high abundance of diterpenoids. The MSE fractions exhibited differential activity against Gram-positive bacteria. Notably, the hexane fraction (HSF) against Streptococcus pyogenes ATCC 19615 (MIC=62.5 µg/mL) exhibited a bactericidal effect. The MSE fractions exhibited cytotoxicity against all cancer cell lines tested, with selectivity towards them compared to a noncancerous cell line. Particularly, the HSF and chloroform fraction (CSF) showed the highest cytotoxicity against prostate cancer (PC-3) cells, with IC50 values of 19.9 and 18.1 µg/mL and selectivity indexes of 3.8 and 4.2, respectively. Both the HSF and ethyl acetate (EASF) fractions of the MSE inhibited NO production in RAW 264.7 macrophages, with NO production percentages of 50.0% and 51.7%, respectively, at a concentration of 30 µg/mL. These results indicated that E. mexicanum can be a source of antibacterial, cytotoxic, and anti-inflammatory metabolites.

BIOLOGÍA Y QUÍMICA QUÍMICA MS analysis • diterpenoids • biological activities

Evaluación de la operación de un tramo del canal principal de riego con un enfoque económico

PENELOPE CRUZ MAYO ARIOSTO AGUILAR CHAVEZ (2022, [Artículo])

DOI: 10.24850/j-tyca-2022-01-03

En este trabajo se presenta un análisis económico e hidráulico para implementar un modelo de control automático de las compuertas de un distrito de riego. El funcionamiento hidráulico de la red de canales se analiza con un modelo de simulación numérica, con diferentes opciones de control automático que se pueden instaurar y un análisis de los precios sombra en la producción agrícola, a partir de los escenarios dinámicos de simulación numérica. Esta metodología se aplica al Distrito de riego 076, ubicado en Valle del Carrizo, Sinaloa, México, y se obtienen diferentes escenarios que pueden ser considerados en la modernización de la red de canales.

Distritos de riego Canales de riego Modelos matemáticos Simulación Valor del agua INGENIERÍA Y TECNOLOGÍA

Nitrogen fertilizer application alters the root endophyte bacterial microbiome in maize plants, but not in the stem or rhizosphere soil

Alejandra Miranda Carrazco Yendi Navarro-Noya Bram Govaerts Nele Verhulst Luc Dendooven (2022, [Artículo])

Plant-associated microorganisms that affect plant development, their composition, and their functionality are determined by the host, soil conditions, and agricultural practices. How agricultural practices affect the rhizosphere microbiome has been well studied, but less is known about how they might affect plant endophytes. In this study, the metagenomic DNA from the rhizosphere and endophyte communities of root and stem of maize plants was extracted and sequenced with the “diversity arrays technology sequencing,” while the bacterial community and functionality (organized by subsystems from general to specific functions) were investigated in crops cultivated with or without tillage and with or without N fertilizer application. Tillage had a small significant effect on the bacterial community in the rhizosphere, but N fertilizer had a highly significant effect on the roots, but not on the rhizosphere or stem. The relative abundance of many bacterial species was significantly different in the roots and stem of fertilized maize plants, but not in the unfertilized ones. The abundance of N cycle genes was affected by N fertilization application, most accentuated in the roots. How these changes in bacterial composition and N genes composition might affect plant development or crop yields has still to be unraveled.

Bacterial Community Structure DArT-Seq Bacterial Community Functionality Genes Involved in N Cycling CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA AGRICULTURAL PRACTICES MAIZE RHIZOSPHERE STEMS NITROGEN FERTILIZERS