Autor: Alison Bentley

Replication Data for: Measurements for multi-trait genomic-enabled prediction accuracy in multi-year breeding trials

Daniel Runcie Maria Itria Ibba Osval Antonio Montesinos-Lopez Leonardo Abdiel Crespo Herrera Alison Bentley Jose Crossa (2021)

Several different genome-based prediction models are available for the analysis of multi-trait data in genomic selection. The supplemental files included in this dataset provide six extensive multi-trait wheat datasets (quality and grain yield) that enable the comparison of performance of genomic-enabled-prediction when calculating the prediction accuracy using different methods. The related article describes the results of the analysis and reports that trait grain yield prediction performance is better under a multi-trait model as compared with the single-trait model.

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA

Replication Data for: Sparse kernel models provide optimization of training set design for genome-based prediction in multi-year wheat breeding data

Marco Lopez-Cruz Susanne Dreisigacker Leonardo Abdiel Crespo Herrera Alison Bentley Ravi Singh Suchismita Mondal Paulino Pérez-Rodríguez Jose Crossa (2021)

When genomic selection (GS) is used in breeding schemes, data from multiple generations can provide opportunities to increase sample size and thus the likelihood of extracting useful information from the training data. The Sparse Selection Index (SSI), is is a method for optimizing training data selection. The data files provided with this study include a large multigeneration wheat dataset of grain yield for 68,836 lines generated across eight cycles (years) as well as genotypic data that were analyzed to test this method. The results of the analysis are published in the corresponding journal article.

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA

Replication Data for: Optimizing sparse testing for genomic prediction of plant breeding crops

Osval Antonio Montesinos-Lopez Carolina Saint Pierre Brandon Alejandro Mosqueda González Alison Bentley Yoseph Beyene Manje Gowda Leonardo Abdiel Crespo Herrera Jose Crossa (2022)

In plant breeding, sparse testing methods have been suggested to improve the efficiency of the genomic selection methodology. The data provided in this dataset were used to evaluate four methods for allocating lines to environments for sparse testing in multi-environment trials. The analysis was conducted using a multi-trait and uni-trait framework. The accompanying article describes the results of the evaluation as well as a cost-benefit analysis to identify the benefits that can be obtained using sparse testing methods.

Dataset

CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA