Development of a next generation SNP genotyping array for wheat

Simon Griffiths Susanne Dreisigacker Alison Bentley Gina Brown-Guedira (2023, [Artículo])

Axiom Array High Throughput Genotyping Hexaploid Wheat Copy Number Variation Analysis CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA SINGLE NUCLEOTIDE POLYMORPHISMS WHEAT GENOTYPING GENETIC DIVERSITY (AS RESOURCE)

Fabrication of PVDF/PMMA Polymer for Sustainable Energy Harvesting .

JOSE RAYMUNDO LEPPE NEREY FERNANDO ZENAIDO SIERRA ESPINOSA MIGUEL ANGEL BASURTO PENSADO JOSE ALFREDO RODRIGUEZ RAMIREZ (2023, [Artículo])

The synthesis of blends that combine properties of two or more polymeric materials is increasingly investigated due to the versatility of the synthesis and its growing potential for many applications, including sustainability. Their characteristics are defined mainly by the synthesis conditions. Therefore, this paper details the synthesis process of easy-to-handle films using mixing method. The procedures and drawbacks found during the preparation of composite films are described. Polymeric compounds formed by the mixture of polyvinylidene fluoride (PVDF) and polymethyl methacrylate (PMMA) are addressed, varying the concentration, and evaluating their impact on the piezoelectric capacity. Films were formed through the spin-coating technique and characterized by optical and holographic microscopes. The results showed that composites with a concentration of 50 wt.% or larger of PVDF in the blend acquire a morphology with a granular appearance, however at lower concentrations they present a homogeneous morphology similar to that of PMMA. A homogeneous distribution of PVDF in the PMMA stands out. However, excessive contents of PMMA are associated to peaks and non-uniformities detected like multicolored regions by digital holography. Controlled strength-strain laboratory tests allowed to evaluate the film blends performance. The results indicate noticeable improvements in voltage output for a composition 70wt% PVDF and 30 wt% PMMA.

INGENIERÍA Y TECNOLOGÍA CIENCIAS TECNOLÓGICAS Polymer blends, Power generation, Energy harvesting, Piezoelectricity,

Growth Promoting Activity of Annona muricata L. Leaf Extracts on Lactobacillus casei

NIMCY NOEMI MEZA GUTIERREZ Paola Magallón Servín ROSENDO BALOIS MORALES IZA FERNANDA PEREZ RAMIREZ GRACIELA GUADALUPE LOPEZ GUZMAN GUILLERMO BERUMEN VARELA Pedro Ulises Bautista Rosales (2022, [Artículo])

"Soursop leaves are a source of phytochemical compounds, such as phenolic acids, flavonoids, hydrolyzable tannins, and acetogenins. These compounds can have several types of biological activities. Lactic acid bacteria can uptake phenolic compounds present in plants or fruits. The aim of the present work was to investigate the in vitro effect of hexane, acetone, methanolic, and aqueous extracts of soursop leaves (Annona muricata L.) on the growth, motility, and biofilm formation of Lactobacillus casei, and to determine compounds related to growth. The minimum concentration promoting growth, motility (swimming, swarming, and twitching), and biofilm-forming capacity (crystal violet) were evaluated. The results showed the growth-promoting capacity of acetone and aqueous extracts at low doses 25–50 mg/L, and an inhibition in the four extracts at higher doses of 100 mg/L. The L. casei growth is related to ellagic acid, quercetin rhamnoside, kaempferol dihexoside, quercetin hexoside, secoisolariciresinol, and kaempferol hexoside-rhamnoside. Hexane extract increased the three types of motility, while aqueous maintained swimming and twitching motility similar to control. The four extracts inhibited the biofilm formation capacity."

prebiotic, Lactobacillus, polyphenol, probiotic, growth promoters, soursop leaves CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CIENCIAS AGRARIAS AGROQUÍMICA REGULADORES DEL CRECIMIENTO DE LAS PLANTAS REGULADORES DEL CRECIMIENTO DE LAS PLANTAS

Aproximación de señales acústicas a través de funciones polinomiales

Approximation of acoustic signals through polynomial functions

Andrea Cruz Rojas (2023, [Tesis de maestría])

Las señales acústicas presentan diversas características, como la frecuencia, amplitud y duración. Existen varias formas de representar una señal acústica, siendo la representación en el dominio del tiempo la más común. Esta representación permite visualizar la variación de la amplitud a lo largo del tiempo, analizar la duración, la forma de onda y los cambios rápidos o lentos en la amplitud. Sin embargo, las señales acústicas pueden contener un gran número de elementos, lo que resulta en archivos digitales de gran tamaño que dificultan su envío y almacenamiento. En este trabajo, se llevó a cabo un estudio de aproximación de señales acústicas utilizando diversas funciones polinomiales, como las funciones Zernike, Bessel y Jinc para reducir la cantidad de datos necesarios para representar la señal acústica, lo que simplifica la manipulación de dichos datos. El objetivo es identificar qué polinomio y cuántos coeficientes ofrecen un mejor rendimiento, es decir, una mejor señal acústica. Este estudio se basa en una evaluación objetiva y subjetiva de la reconstrucción de las señales acústicas, lo cual, hasta donde tenemos conocimiento, no se ha estudiado utilizando ambas metodologías en conjunto.

Acoustic signals have various characteristics, such as frequency, amplitude and duration. There are several ways to represent an acoustic signal, with time domain representation being the most common. This representation allows you to visualize the variation of the amplitude over time, analyze the duration, the waveform and the fast or slow changes in the amplitude. However, acoustic signals can contain a large number of elements, resulting in large digital files that make them difficult to send and store. In this work, an approximation study of acoustic signals was carried out using various polynomial functions, such as the Zernike, Bessel and Jinc functions to reduce the amount of data necessary to represent the acoustic signal, which simplifies the manipulation of said data. The objective is to identify which polynomial and how many coefficients offer better performance, that is, a better acoustic signal. This study is based on an objective and subjective evaluation of the reconstruction of acoustic signals, which, to the best of our knowledge, has not been studied using both methodologies together.

Calidad de audio, Compresión de señal acústica, Polinomios ortogonales, Pruebas objetivas y subjetivas. Audio quality, Acoustic signal compression, Orthogonal polynomials, Objective and Subjective Tests INGENIERÍA Y TECNOLOGÍA CIENCIAS TECNOLÓGICAS TECNOLOGÍA DE LAS TELECOMUNICACIONES ELECTROACÚSTICA ELECTROACÚSTICA

Evaluación de la cinética de liberación de compuestos hidrofílicos y lipofílicos a partir de nanopartículas híbridas polímero-lípido

Evaluation of the release kinetics of hydrophilic and lipophilic compounds from polymer-lipid hybrid nanoparticles

Juan Pablo Carmona Almazán (2023, [Tesis de maestría])

En el tratamiento de enfermedades, la administración de dosis múltiples es una estrategia común para mantener la concentración de los fármacos dentro de un margen terapéutico. Sin embargo, la adherencia de los pacientes a este tipo de tratamiento puede ser un desafío, llevando a una administración irregular de dosis. Una alternativa utilizada para abordar este reto son las nanopartículas híbridas polímero/lípido(NPPLs), las cuales, con menos administraciones, tienen el potencial de alcanzar la dosis necesaria en el tratamiento, posibilitando entonces el incremento del apego al tratamiento. En nuestro proyecto, se llevó a cabo la síntesis de nanopartículas de ácido poli láctico-co-glicólico (PLGA) recubiertas de lecitina de soya, por medio de técnicas de nanoprecipitación y autoensamblaje. Además, integramos estas nanopartículas en una matriz polimérica a base de aerogeles de gelatina de manera que estuvieran distribuidas de manera homogénea y concentrada. Nuestro enfoque central radica en entender la cinética de liberación de un compuesto hidrofílico (ácido gálico) y uno lipofílico (quercetina) a partir de este sistema. Logramos sintetizar nanopartículas con un diámetro hidrodinámico de 100 ± 15 nm, 153 ± 33 y149±21 nm, en el caso de las nanopartículas vacías y cargadas con ácido gálico y cargadas con quercetina, respectivamente. La eficiencia de encapsulación del ácido gálico fue del 90 ± 5 % y de la quercetina fue del 70 ± 10 %. Los resultados que obtuvimos muestran que el ácido gálico sigue una cinética del modelo de Korsmeyer-Peppas, con un valor de n = 1.01 y la quercetina una cinética de primer orden. Dado que los compuestos encapsulados tuvieron una liberación más lenta con respecto a los compuestos libres en los aerogeles de gelatina, nuestro trabajo indica que el encapsulamiento en NPPLs de un compuesto bioactivo, independientemente de su naturaleza química, puede ayudar a retrasar su liberación y reducir el número de dosis administradas, en consecuencia, esto pudiera contribuir a incrementar el apego de un paciente al tratamiento.

In the treatment of diseases, the administration of multiple doses is a common strategy to maintain drug concentrations within a therapeutic range. However, patient adherence to this type of treatment can be challenging, resulting in irregular dosing. An alternative approach used to address this challenge involves polymer/lipid hybrid nanoparticles (NPPLs), which have the potential to achieve the necessary drug dose with fewer administrations, thereby increasing treatment adherence. In our project, we synthesized poly(lactic-co-glycolic acid) (PLGA) nanoparticles coated with soy lecithin using nanoprecipitation and self-assembly techniques. These nanoparticles were then integrated into a polymer matrix based on gelatin aerogels to ensure homogeneous and concentrated distribution. Our main focus was to understand the release kinetics of a hydrophilic compound (gallic acid) and a lipophilic one (quercetin) from this system. We successfully synthesized nanoparticles with a hydrodynamic diameter of 100 ± 15 nm, 153 ± 33 nm, and 149 ± 21 nm for empty nanoparticles, gallic acid-loaded, and quercetin-loaded nanoparticles, respectively. The encapsulation efficiency was 90 ± 5 % for gallic acid and 70 ± 10 % for quercetin. The results we obtained indicate that gallic acid follows Korsmeyer-Peppas kinetics with a value of n = 1.01, while quercetin exhibits first-order kinetics. Since the encapsulated compounds showed slower release compared to free compounds in gelatin aerogels, our work suggests that encapsulation in NPPLs with a bioactive compound, regardless of its chemical nature, can help delay its release and reduce the number of doses administered. Consequently, this could contribute to improve patient treatment adherence.

nanopartículas híbridas, cinética de liberación, sistemas poliméricos, PLGA/lecitina, compuestos hidrofílicos y lipofílicos hybrid nanoparticles, release kinetics, polymeric systems, PLGA/lecithin, hydrophilic and lipophilic compounds INGENIERÍA Y TECNOLOGÍA CIENCIAS TECNOLÓGICAS INGENIERÍA Y TECNOLOGÍA QUÍMICAS ANÁLISIS DE POLÍMEROS ANÁLISIS DE POLÍMEROS

Maintenance of Coastal Surface Blooms by Surface Temperature Stratification and Wind Drift

MARY CARMEN RUIZ DE LA TORRE (2013, [Artículo])

Algae blooms are an increasingly recurrent phenomenon of potentially socio-economic impact in coastal waters globally and in the coastal upwelling region off northern Baja California, Mexico. In coastal upwelling areas the diurnal wind pattern is directed towards the coast during the day. We regularly found positive Near Surface Temperature Stratification (NSTS), the resulting density stratification is expected to reduce the frictional coupling of the surface layer from deeper waters and allow for its more efficient wind transport. We propose that the net transport of the top layer of approximately 2.7 kilometers per day towards the coast helps maintain surface blooms of slow growing dinoflagellate such as Lingulodinium polyedrum. We measured: near surface stratification with a free-rising CTD profiler, trajectories of drifter buoys with attached thermographs, wind speed and direction, velocity profiles via an Acoustic Doppler Current Profiler, Chlorophyll and cell concentration from water samples and vertical migration using sediment traps. The ADCP and drifter data agree and show noticeable current shear within the first meters of the surface where temperature stratification and high cell densities of L. polyedrum were found during the day. Drifters with 1m depth drogue moved towards the shore, whereas drifters at 3 and 5 m depth showed trajectories parallel or away from shore. A small part of the surface population migrated down to the sea floor during night thus reducing horizontal dispersion. The persistent transport of the surface bloom population towards shore should help maintain the bloom in favorable environmental conditions with high nutrients, but also increasing the potential socioeconomic impact of the blooms. The coast wise transport is not limited to blooms but includes all dissolved and particulate constituents in surface waters. © 2013 Ruiz-de la Torre et al.

chlorophyll, algal bloom, article, cell count, cell density, coastal waters, controlled study, dinoflagellate, Lingulodinium polyedrum, meteorological phenomena, Mexico, near surface temperature stratification, nonhuman, nutrient concentration, popul CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Integrative taxonomy and molecular phylogeny of genus Aplysina (Demospongiae: Verongida) from Mexican Pacific

José Antonio Cruz-Barraza (2012, [Artículo])

Integrative taxonomy provides a major approximation to species delimitation based on integration of different perspectives (e.g. morphology, biochemistry and DNA sequences). The aim of this study was to assess the relationships and boundaries among Eastern Pacific Aplysina species using morphological, biochemical and molecular data. For this, a collection of sponges of the genus Aplysina from the Mexican Pacific was studied on the basis of their morphological, chemical (chitin composition), and molecular markers (mitochondrial COI and nuclear ribosomal rDNA: ITS1-5.8-ITS2). Three morphological species were identified, two of which are new to science. A. clathrata sp. nov. is a yellow to yellow-reddish or -brownish sponge, characterized by external clathrate-like morphology; A. revillagigedi sp. nov. is a lemon yellow to green, cushion-shaped sometimes lobate sponge, characterized by conspicuous oscules, which are slightly elevated and usually linearly distributed on rims; and A. gerardogreeni a known species distributed along the Mexican Pacific coast. Chitin was identified as the main structural component within skeletons of the three species using FTIR, confirming that it is shared among Verongida sponges. Morphological differences were confirmed by DNA sequences from nuclear ITS1-5.8-ITS2. Mitochondrial COI sequences showed extremely low but diagnostic variability for Aplysina revillagigedi sp. nov., thus our results corroborate that COI has limited power for DNA-barcoding of sponges and should be complemented with other markers (e.g. rDNA). Phylogenetic analyses of Aplysina sequences from the Eastern Pacific and Caribbean, resolved two allopatric and reciprocally monophyletic groups for each region. Eastern Pacific species were grouped in general accordance with the taxonomic hypothesis based on morphological characters. An identification key of Eastern Pacific Aplysina species is presented. Our results constitute one of the first approximations to integrative taxonomy, phylogeny and evolutionary biogeography of Eastern Pacific marine sponges; an approach that will significantly contribute to our better understanding of their diversity and evolutionary history. © 2012 Cruz et al.

chitin, genomic DNA, mitochondrial DNA, molecular marker, ribosome DNA, allopatry, Aplysina clatharata, Aplysina gerardogreeni, Aplysina revillagigedi, article, DNA barcoding, DNA sequence, genetic polymorphism, genetic variability, infrared spectros CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA