Transcriptome mining provides insights into cell wall metabolism and fiber lignification in Agave tequilana Weber

Luis Fernando Maceda Lopez ELSA BEATRIZ GONGORA CASTILLO Enrique Ibarra-Laclette DALIA C. MORAN VELAZQUEZ AMARANTA GIRON RAMIREZ Matthieu Bourdon José Luis Villalpando Aguilar Gabriela Chavez-Calvillo Toomer John Tang Parastoo Azadi Jorge Manuel Santamaría Fernández Itzel López-Rosas Mercedes G Lopez June Simpson FULGENCIO ALATORRE COBOS (2022, [Artículo])

Resilience of growing in arid and semiarid regions and a high capacity of accumulating sugar-rich biomass with low lignin percentages have placed Agave species as an emerging bioen-ergy crop. Although transcriptome sequencing of fiber-producing agave species has been explored, molecular bases that control wall cell biogenesis and metabolism in agave species are still poorly understood. Here, through RNAseq data mining, we reconstructed the cellulose biosynthesis pathway and the phenylpropanoid route producing lignin monomers in A. tequilana, and evaluated their expression patterns in silico and experimentally. Most of the orthologs retrieved showed differential expression levels when they were analyzed in different tissues with contrasting cellulose and lignin accumulation. Phylogenetic and structural motif analyses of putative CESA and CAD proteins allowed to identify those potentially involved with secondary cell wall formation. RT-qPCR assays revealed enhanced expression levels of AtqCAD5 and AtqCESA7 in parenchyma cells associated with extraxylary fibers, suggesting a mechanism of formation of sclerenchyma fibers in Agave similar to that reported for xylem cells in model eudicots. Overall, our results provide a framework for un-derstanding molecular bases underlying cell wall biogenesis in Agave species studying mechanisms involving in leaf fiber development in monocots. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.

AGAVE CELL WALLS LIGNOCELLULOSE CAD PROTEIN CESA PROTEIN SCLERENCHYMA BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA MOLECULAR DE PLANTAS GENÉTICA MOLECULAR DE PLANTAS

Optimization of the alkali-silane treatment of agave lechuguilla fibers (ixtle) for potential reinforcement in polymeric composites

NOEMI JARDON MAXIMINO MARIAMNE DEHONOR GOMEZ Rolando Villa Moreno MARIA DOLORES BAEZA ALVARADO Luis Edmundo Lugo Uribe (2023, [Artículo])

Reinforced polymeric composites with natural fibers have garnered significant interest in recent years due to the need for biomass utilization and the requirements of various industries, such as automotive and construction. Among these natural fibers, Agave lechuguilla fiber, commonly known as ixtle (FIx) or Tampico fiber, exhibits important characteristics such as length, high strength, and durability. However, there is limited literature on its conditioning, functionalization, and utilization as a reinforcing material in polymeric composites (CP). This study presents the optimization of the alkali-silane treatment of FIx, identifying the most suitable reaction conditions to enhance their thermal stability, tensile strength, and silane coupling agent (ACSi) grafting on the fiber surface. The chemical treatment with ACSi proved highly effective, resulting in a significant grafting content, which was confirmed through FTIR and SEM–EDS analyses. The high level of functionalization did not compromise the mechanical performance of the fibers, suggesting that functionalized FIx holds great potential as a reinforcing material in CP. These findings open new paths for the sustainable use of Agave lechuguilla fibers, contributing to the development of environmentally friendly and high-performance polymeric composites in various industrial applications.

This article belongs to the Special Issue Natural Fibers for Advanced Materials: Addressing Challenges).

Supplementary materials: The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/fib11100086/s1, Figure S1: Optical microscope image of ixtle fibers at a magnification of 50 (a) untreated and (b) alkaline treated (FIx-5); Table S1: FTIR signal assignment for alkaline treated FIx; Table S2: FTIR Signal assignment for silane treated FIx.

Author contributions: Conceptualization, N.J.-M. and L.E.L.U.; methodology, N.J.-M., M.D.G., R.V.M., M.D.B.-A. and L.E.L.U.; validation, N.J.-M. and L.E.L.U.; formal analysis, N.J.-M., M.D.G. and L.E.L.U.; investigation, N.J.-M. and L.E.L.U.; data curation, N.J.-M., M.D.G., R.V.M. and M.D.B.-A.; writing—original draft preparation, N.J.-M. and L.E.L.U.; writing—review and editing, N.J.-M., M.D.G., R.V.M., M.D.B.-A. and L.E.L.U.; visualization, N.J.-M., M.D.G. and L.E.L.U.; supervision, L.E.L.U.; project administration, N.J.-M. and L.E.L.U.; funding acquisition, N.J.-M. and L.E.L.U. All authors have read and agreed to the published version of the manuscript.

Funding: This research was funded by CONAHCYT, “Estancias postdoctorales por México”, grant umber CVU425480.

Data availability statement: Data supporting the findings of this study are available within the article and upon request from the corresponding author.

Acknowledgments: The authors express their gratitude towards Rene Diaz Rebollar and Jazmin Gomez Sara for their technical assistance in conducting the chemical reactions presented in this current study. Additionally, the assistance provided by Luis Alberto Caceres Diaz in the execution of XRD analyses is also acknowledged. Furthermore, N.J.M. extends sincere recognition to CIATEQ A.C. for their provision of essential resources and infrastructure crucial to the advancement of this research. The support rendered by CONAHCYT through the “Estancias postdoctorales por México” program is also gratefully acknowledged, as it has contributed financial backing to the project. Conflicts of Interest: The authors declare no conflict of interest.

Agave lechuguilla Natural fiber Silane coupling agent INGENIERÍA Y TECNOLOGÍA CIENCIAS TECNOLÓGICAS OTRAS ESPECIALIDADES TECNOLÓGICAS OTRAS OTRAS

Integrative taxonomy and molecular phylogeny of genus Aplysina (Demospongiae: Verongida) from Mexican Pacific

José Antonio Cruz-Barraza (2012, [Artículo])

Integrative taxonomy provides a major approximation to species delimitation based on integration of different perspectives (e.g. morphology, biochemistry and DNA sequences). The aim of this study was to assess the relationships and boundaries among Eastern Pacific Aplysina species using morphological, biochemical and molecular data. For this, a collection of sponges of the genus Aplysina from the Mexican Pacific was studied on the basis of their morphological, chemical (chitin composition), and molecular markers (mitochondrial COI and nuclear ribosomal rDNA: ITS1-5.8-ITS2). Three morphological species were identified, two of which are new to science. A. clathrata sp. nov. is a yellow to yellow-reddish or -brownish sponge, characterized by external clathrate-like morphology; A. revillagigedi sp. nov. is a lemon yellow to green, cushion-shaped sometimes lobate sponge, characterized by conspicuous oscules, which are slightly elevated and usually linearly distributed on rims; and A. gerardogreeni a known species distributed along the Mexican Pacific coast. Chitin was identified as the main structural component within skeletons of the three species using FTIR, confirming that it is shared among Verongida sponges. Morphological differences were confirmed by DNA sequences from nuclear ITS1-5.8-ITS2. Mitochondrial COI sequences showed extremely low but diagnostic variability for Aplysina revillagigedi sp. nov., thus our results corroborate that COI has limited power for DNA-barcoding of sponges and should be complemented with other markers (e.g. rDNA). Phylogenetic analyses of Aplysina sequences from the Eastern Pacific and Caribbean, resolved two allopatric and reciprocally monophyletic groups for each region. Eastern Pacific species were grouped in general accordance with the taxonomic hypothesis based on morphological characters. An identification key of Eastern Pacific Aplysina species is presented. Our results constitute one of the first approximations to integrative taxonomy, phylogeny and evolutionary biogeography of Eastern Pacific marine sponges; an approach that will significantly contribute to our better understanding of their diversity and evolutionary history. © 2012 Cruz et al.

chitin, genomic DNA, mitochondrial DNA, molecular marker, ribosome DNA, allopatry, Aplysina clatharata, Aplysina gerardogreeni, Aplysina revillagigedi, article, DNA barcoding, DNA sequence, genetic polymorphism, genetic variability, infrared spectros CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA