Catching-up with genetic progress: Simulation of potential production for modern wheat cultivars in the Netherlands

João Vasco Silva Frits K. Van Evert Pytrik Reidsma (2023, [Artículo])

Context: Wheat crop growth models from all over the world have been calibrated on the Groot and Verberne (1991) data set, collected between 1982 and 1984 in the Netherlands, in at least 28 published studies to date including various recent ones. However, the recent use of this data set for calibration of potential yield is questionable as actual Dutch winter wheat yields increased by 3.1 Mg ha-1 over the period 1984 – 2015. A new comprehensive set of winter wheat experiments, suitable for crop model calibration, was conducted in Wageningen during the growing seasons of 2013–2014 and of 2014–2015. Objective: The present study aimed to quantify the change of winter wheat variety traits between 1984 and 2015 and to examine which of the identified traits explained the increase in wheat yield most. Methods: PCSE-LINTUL3 was calibrated on the Groot and Verberne data (1991) set. Next, it was evaluated on the 2013–2015 data set. The model was further recalibrated on the 2013–2015 data set. Parameter values of both calibrations were compared. Sensitivity analysis was used to assess to what extent climate change, elevated CO2, changes in sowing dates, and changes in cultivar traits could explain yield increases. Results: The estimated reference light use efficiency and the temperature sum from anthesis to maturity were higher in 2013–2015 than in 1982–1984. PCSE-LINTUL3, calibrated on the 1982–1984 data set, underestimated the yield potential of 2013–2015. Sensitivity analyses showed that about half of the simulated winter wheat yield increase between 1984 and 2015 in the Netherlands was explained by elevated CO2 and climate change. The remaining part was explained by the increased temperature sum from anthesis to maturity and, to a smaller extent, by changes in the reference light use efficiency. Changes in sowing dates, biomass partitioning fractions, thermal requirements for anthesis, and biomass reallocation did not explain the yield increase. Conclusion: Recalibration of PCSE-LINTUL3 was necessary to reproduce the high wheat yields currently obtained in the Netherlands. About half of the reported winter wheat yield increase was attributed to climate change and elevated CO2. The remaining part of the increase was attributed to changes in the temperature sum from anthesis to maturity and, to a lesser extent, the reference light use efficiency. Significance: This study systematically addressed to what extent changes in various cultivar traits, climate change, and elevated CO2 can explain the winter wheat yield increase observed in the Netherlands between 1984 and 2015.

Light Use Efficiency Potential Yield CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CROP MODELLING LIGHT PHENOLOGY MAXIMUM SUSTAINABLE YIELD TRITICUM AESTIVUM WINTER WHEAT

Genome-wide association analyses of agronomic traits and Striga hermonthica resistance in pearl millet

Hussein Shimelis Chris Ojiewo Abhishek Rathore (2023, [Artículo])

Pearl millet (Pennisetum glaucum [L.] R. Br.) is a nutrient-dense, relatively drought-tolerant cereal crop cultivated in dry regions worldwide. The crop is under-researched, and its grain yield is low (< 0.8 tons ha−1) and stagnant in the major production regions, including Burkina Faso. The low productivity of pearl millet is mainly attributable to a lack of improved varieties, Striga hermonthica [Sh] infestation, downy mildew infection, and recurrent heat and drought stress. Developing high-yielding and Striga-resistant pearl millet varieties that satisfy the farmers’ and market needs requires the identification of yield-promoting genes linked to economic traits to facilitate marker-assisted selection and gene pyramiding. The objective of this study was to undertake genome-wide association analyses of agronomic traits and Sh resistance among 150 pearl millet genotypes to identify genetic markers for marker-assisted breeding and trait introgression. The pearl millet genotypes were phenotyped in Sh hotspot fields and screen house conditions. Twenty-nine million single nucleotide polymorphisms (SNPs) initially generated from 345 pearl millet genotypes were filtered, and 256 K SNPs were selected and used in the present study. Phenotypic data were collected on days to flowering, plant height, number of tillers, panicle length, panicle weight, thousand-grain weight, grain weight, number of emerged Striga and area under the Striga number progress curve (ASNPC). Agronomic and Sh parameters were subjected to combined analysis of variance, while genome-wide association analysis was performed on phenotypic and SNPs data. Significant differences (P < 0.001) were detected among the assessed pearl millet genotypes for Sh parameters and agronomic traits. Further, there were significant genotype by Sh interaction for the number of Sh and ASNPC. Twenty-eight SNPs were significantly associated with a low number of emerged Sh located on chromosomes 1, 2, 3, 4, 6, and 7. Four SNPs were associated with days-to-50%-flowering on chromosomes 3, 5, 6, and 7, while five were associated with panicle length on chromosomes 2, 3, and 4. Seven SNPs were linked to thousand-grain weight on chromosomes 2, 3, and 6. The putative SNP markers associated with a low number of emerged Sh and agronomic traits in the assessed genotypes are valuable genomic resources for accelerated breeding and variety deployment of pearl millet with Sh resistance and farmer- and market-preferred agronomic traits.

High-Yielding Varieties Striga-Resistant Agronomic Parameters CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA GENOME-WIDE ASSOCIATION STUDIES STRIGA HERMONTHICA PEARL MILLET

Mapping QTL for phenological and grain-related traits in a mapping population derived from high-zinc-biofortified wheat

Gopalareddy Krishnappa Govindan Velu (2023, [Artículo])

DArT-Seq Gene Mapping Yield Component Traits CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA WHEAT QUANTITATIVE TRAIT LOCI CANDIDATE GENES QUANTITATIVE TRAIT LOCI MAPPING YIELD COMPONENTS BIOFORTIFICATION

The impact of 1.5 °C and 2.0 °C global warming on global maize production and trade

Wei Xiong Tariq Ali (2022, [Artículo])

Future Climate Scenario Data Yield Reduction Risk CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CLIMATE CHANGE GREENHOUSE EFFECT MAIZE MITIGATION SIMULATION ACCLIMATIZATION ADAPTATION GLOBAL WARMING

Effect of Nitrogen, Phosphorus and Potassium on regional organic substrates in Agave salmiana production in Huichapan, Hidalgo, Mexico

EMILIO RAYMUNDO MORALES MALDONADO MONICA GUTIERREZ ROJAS RAMON JAIME HOLGUIN PEÑA Daniel Ruiz-Juárez Jorge Luis Vega Chávez Ana Cristina Reyes Godoy (2022, [Artículo])

"Mexico has 159 species of Agave spp. In the agri-food industry stand out are Agave tequilana, A. angustifolia, and A. salmiana. A limitation to producing maguey seedlings is the low availability of organic substrates that favor plant adaptation in the field. The objective was to evaluate the effect of nitrogen (N), phosphorus (P) and potassium (K) found in substrates in response to vegetative and root growth of A. salmiana in agricultural areas of Huichapan, Hidalgo, Mexico. The treatment consisted of earthworm humus (EH) and leaf compost (LC) substrates with materials from the region with different percentages of EH (100, 75, 50%), LC (5, 10%), and sand (20, 40%). The treatments were applied with 14 random replications in two phases in seeds and 40-day-seedlings. The variables evaluated were NPK amount and pH in substrates. The physiological variables measured were plant height, leaf number, stem diameter, root length, and volume. Significant differences (P≤0.05) were observed in seedling physiology due to the effect of the treatment. The best agronomic responses (plant growth and root length/weight) of Agave seedlings were T5 (75% earthworm humus + 20% sand + 5% leaf-soil) and T6 (50% earthworm humus + 40% sand + 10% leaf-soil); in both treatments, the NPK percentages were different from the control (Haplic Phaeozem soil) group. The final concentration of NPK in T6 was N = 0.04%, P = 398.13 mg Kg-1 and K = 11.88 meq 100g-1 . The results infer that NPK availability in soil and progressive acidification (initial pH = 8.6, final pH = 7.4) of the substrate can favorably influence the plant response. The interactions between NPK availability in the substrate and their use for a better response in maguey seedling adaptability open up new lines of research on the productive systems in the región of Huichapan, Hidalgo, Mexico."

maguey, nutritional quality, plant physiology, productive soils, seedling BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) FERTILIDAD DEL SUELO FERTILIDAD DEL SUELO

Movements of scalloped hammerhead sharks (Sphyrna lewini) at Cocos Island, Costa Rica and between oceanic islands in the Eastern Tropical Pacific

Elena Nalesso (2019, [Artículo])

Many species of sharks form aggregations around oceanic islands, yet their levels of residency and their site specificity around these islands may vary. In some cases, the waters around oceanic islands have been designated as marine protected areas, yet the conservation value for threatened shark species will depend greatly on how much time they spend within these protected waters. Eighty-four scalloped hammerhead sharks (Sphyrna lewini Griffith & Smith), were tagged with acoustic transmitters at Cocos Island between 2005–2013. The average residence index, expressed as a proportion of days present in our receiver array at the island over the entire monitoring period, was 0.52±0.31, implying that overall the sharks are strongly associated with the island. Residency was significantly greater at Alcyone, a shallow seamount located 3.6 km offshore from the main island, than at the other sites. Timing of presence at the receiver locations was mostly during daytime hours. Although only a single individual from Cocos was detected on a region-wide array, nine hammerheads tagged at Galapagos and Malpelo travelled to Cocos. The hammerheads tagged at Cocos were more resident than those visiting from elsewhere, suggesting that the Galapagos and Malpelo populations may use Cocos as a navigational waypoint or stopover during seasonal migrations to the coastal Central and South America. Our study demonstrates the importance of oceanic islands for this species, and shows that they may form a network of hotspots in the Eastern Tropical Pacific. © 2019 Nalesso et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

article, Cocos Island, human, monitoring, nonhuman, resident, shark, South America, animal, Costa Rica, environmental protection, island (geological), movement (physiology), physiology, season, shark, Animals, Conservation of Natural Resources, Costa CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA

Vibrissa growth rate in California sea lions based on environmental and isotopic oscillations

MARTHA PATRICIA ROSAS HERNANDEZ (2018, [Artículo])

Pinniped vibrissae provide information on changes in diet at seasonal and annual scales; however, species-specific growth patterns must first be determined in order to interpret these data. In this study, a simple linear model was used to estimate the growth rate of vibrissae from adult female California sea lions (Zalophus californianus) from San Esteban Island in the Gulf of California, Mexico. The δ15N and δ13C values do not display a marked oscillatory pattern that would permit direct determination of the time period contained in each vibrissa; thus, time (age) was calculated in two ways: 1) based on the correlation between the observed number of peaks (Fourier series) in the δ15N profile and the length of each vibrissa, and 2) through direct comparison with the observed number of peaks in the δ15N profile. Cross-correlation confirmed that the two peaks in the δ15N profile reflected the two peaks in the chlorophyll-a concentration recorded annually around the island. The mean growth rate obtained from the correlation was 0.08 ± 0.01 mm d-1, while that calculated based on the observed number of peaks was 0.10 ± 0.05 mm d-1. Both are consistent with the rates reported for adult females of other otariid species (0.07 to 0.11 mm d-1). Vibrissa growth rates vary by individual, age, sex, and species; moreover, small differences in the growth rate can result in significant differences over the time periods represented by the isotopic signal. Thus, it is important to assess this parameter on a species-by-species basis. © 2018 Rosas-Hernández et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

carbon, nitrogen, animal, California, chemistry, diet, female, island (geological), Mexico, Otariidae, physiology, Animals, California, Carbon Isotopes, Diet, Female, Islands, Mexico, Nitrogen Isotopes, Sea Lions BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA INMUNOLOGÍA INMUNOLOGÍA

Vibrissa growth rate in California sea lions based on environmental and isotopic oscillations

MARTHA PATRICIA ROSAS HERNANDEZ (2018, [Artículo])

Pinniped vibrissae provide information on changes in diet at seasonal and annual scales; however, species-specific growth patterns must first be determined in order to interpret these data. In this study, a simple linear model was used to estimate the growth rate of vibrissae from adult female California sea lions (Zalophus californianus) from San Esteban Island in the Gulf of California, Mexico. The δ15N and δ13C values do not display a marked oscillatory pattern that would permit direct determination of the time period contained in each vibrissa; thus, time (age) was calculated in two ways: 1) based on the correlation between the observed number of peaks (Fourier series) in the δ15N profile and the length of each vibrissa, and 2) through direct comparison with the observed number of peaks in the δ15N profile. Cross-correlation confirmed that the two peaks in the δ15N profile reflected the two peaks in the chlorophyll-a concentration recorded annually around the island. The mean growth rate obtained from the correlation was 0.08 ± 0.01 mm d-1, while that calculated based on the observed number of peaks was 0.10 ± 0.05 mm d-1. Both are consistent with the rates reported for adult females of other otariid species (0.07 to 0.11 mm d-1). Vibrissa growth rates vary by individual, age, sex, and species; moreover, small differences in the growth rate can result in significant differences over the time periods represented by the isotopic signal. Thus, it is important to assess this parameter on a species-by-species basis. © 2018 Rosas-Hernández et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

carbon, nitrogen, animal, California, chemistry, diet, female, island (geological), Mexico, Otariidae, physiology, Animals, California, Carbon Isotopes, Diet, Female, Islands, Mexico, Nitrogen Isotopes, Sea Lions CIENCIAS FÍSICO MATEMÁTICAS Y CIENCIAS DE LA TIERRA CIENCIAS DE LA TIERRA Y DEL ESPACIO OCEANOGRAFÍA OCEANOGRAFÍA