Multi-locus genome wide association mapping for yield and its contributing traits in hexaploid wheat under different water regimes

Vijay Gahlaut Vandana Jaiswal Pushpendra Kumar Gupta (2019, [Artículo])

Genome-Wide Association Study Marker-Trait Associations CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA GENETIC LINKAGE GENETICS PROCEDURES QUANTITATIVE TRAIT LOCI WHEAT CHROMOSOME MAPPING

Influence of conservation agriculture-based production systems on bacterial diversity and soil quality in rice-wheat-greengram cropping system in eastern Indo-Gangetic Plains of India

Anup Das virender kumar Peter Craufurd Andrew Mcdonald Sonam Sherpa (2023, [Artículo])

Introduction: Conservation agriculture (CA) is gaining attention in the South Asia as an environmentally benign and sustainable food production system. The knowledge of the soil bacterial community composition along with other soil properties is essential for evaluating the CA-based management practices for achieving the soil environment sustainability and climate resilience in the rice-wheat-greengram system. The long-term effects of CA-based tillage-cum-crop establishment (TCE) methods on earthworm population, soil parameters as well as microbial diversity have not been well studied. Methods: Seven treatments (or scenarios) were laid down with the various tillage (wet, dry, or zero-tillage), establishment method (direct-or drill-seeding or transplantation) and residue management practices (mixed with the soil or kept on the soil surface). The soil samples were collected after 7 years of experimentation and analyzed for the soil quality and bacterial diversity to examine the effect of tillage-cum-crop establishment methods. Results and Discussion: Earthworm population (3.6 times), soil organic carbon (11.94%), macro (NPK) (14.50–23.57%) and micronutrients (Mn, and Cu) (13.25 and 29.57%) contents were appreciably higher under CA-based TCE methods than tillage-intensive farming practices. Significantly higher number of OTUs (1,192 ± 50) and Chao1 (1415.65 ± 14.34) values were observed in partial CA-based production system (p ≤ 0.05). Forty-two (42) bacterial phyla were identified across the scenarios, and Proteobacteria, Actinobacteria, and Firmicutes were the most dominant in all the scenarios. The CA-based scenarios harbor a high abundance of Proteobacteria (2–13%), whereas the conventional tillage-based scenarios were dominated by the bacterial phyla Acidobacteria and Chloroflexi and found statistically differed among the scenarios (p ≤ 0.05). Composition of the major phyla, i.e., Proteobacteria, Actinobacteria, and Firmicutes were associated differently with either CA or farmers-based tillage management practices. Overall, the present study indicates the importance of CA-based tillage-cum-crop establishment methods in shaping the bacterial diversity, earthworms population, soil organic carbon, and plant nutrient availability, which are crucial for sustainable agricultural production and resilience in agro-ecosystem.

Metagenomics Bacterial Diversity Rice-Wheat-Greengram CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CONSERVATION AGRICULTURE DNA SEQUENCES EARTHWORMS METAGENOMICS SOIL QUALITY AGROECOSYSTEMS

COMPOSICIÓN FLORÍSTICA DE CUATRO HÁBITATS EN EL RANCHO LAS PAPAS DE ARRIBA, MUNICIPIO DE OJUELOS DE JALISCO, JALISCO, MÉXICO

Mollie Harker LUZ ADRIANA GARCIA RUBIO MONICA ELIZABETH RIOJAS LOPEZ (2008, [Artículo])

En el rancho Las Papas de Arriba, municipio de Ojuelos de Jalisco, Jalisco se estudió la composición florística y las formas biológicas de cuatro hábitats: matorral xerófilo crasicaule, pastizal, cultivo maduro de nopal tunero (Opuntia spp.) y cultivo joven de nopal tunero, con el objetivo de dar cuenta de la riqueza de este sitio y comparar la fisonomía de los diferentes ambientes. El catálogo consta de 356 especies y taxa subespecíficos, las que representan 73 familias y 230 géneros de plantas vasculares. Las familias con mayor número de géneros y especies son Asteraceae (48, 76), Poaceae (29, 46), Fabaceae (13, 19) y Cactaceae (6, 19) y los géneros con mayor riqueza Opuntia (10), Euphorbia (9), Solanum (7), Pseudognaphalium (6), Bouteloua (6), Ipomoea (6) y Muhlenbergia (6). Del total de especies registradas, 36% son endémicas de México y 4% son introducidas; nueve no se conocían antes de Jalisco y cinco tienen problemas de conservación. Las formas de vida mejor representadas son las plantas herbáceas con 285 especies, anuales 108 y perennes 177 (en conjunto alcanzando 80% del total). El matorral muestra la mayor diversidad alfa con 223 especies (62.6 % del total) y es el hábitat más complejo en fisonomía conteniendo siete formas de vida, así como el que presenta el mayor número de elementos exclusivos. El pastizal contiene 119 especies (33.4% del total), el cultivo maduro de nopal 138 (38.8%) y el cultivo joven de nopal 132 (37.1%). Estos dos últimos hábitats fueron los más similares en cuanto a la composición florística compartiendo 35% de las especies.

BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA BIOLOGÍA VEGETAL (BOTÁNICA) BOTÁNICA GENERAL BOTÁNICA GENERAL

Genetic diversity and population structure of African sorghum (sorghum bicolor L. moench) accessions assessed through single nucleotide polymorphisms markers

Hussein Shimelis Baloua Nébié Chris Ojiewo Abhishek Rathore (2023, [Artículo])

Heterotic Grouping Breeding Population Development Marker-Assisted Cultivar Development CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA POPULATION STRUCTURE GENE FLOW SINGLE NUCLEOTIDE POLYMORPHISMS SORGHUM BICOLOR BREEDING PROGRAMMES

Population genetic structure of the maize weevil, Sitophilus zeamais, in southern Mexico

Michael Jones Martha Willcox (2023, [Artículo])

Maize Weevil Genetic Structure CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA AGRICULTURAL WORKERS FILTRATION GENE FLOW MAIZE SINGLE NUCLEOTIDE POLYMORPHISM SITOPHILUS ZEAMAIS CURCULIONIDAE

Metrics for optimum allocation of resources on the composition and characterization of crop collections: The CIMMYT wheat collection as a proof of concept

M. Humberto Reyes-Valdés Juan Burgueño Carolina Sansaloni Thomas Payne Rosa Angela Pacheco Gil (2022, [Artículo])

Crop Genebanks Optimization Relative Balance CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CROPS GENE BANKS WHEAT

Gene editing to accelerate crop breeding

Kanwarpal Dhugga (2022, [Artículo])

Accelerated Breeding Grain Biofortification Maize Lethal Necrosis Rust Resistance Site-Directed Nuclease Scenarios CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA BREEDING BACKCROSSING DISEASE RESISTANCE GENE EDITING GRAIN BIOFORTIFICATION RUSTS

Enhancing maize's nitrogen-fixing potential through ZmSBT3, a gene suppressing mucilage secretion

jiafa chen XUECAI ZHANG Jianyu Wu (2023, [Artículo])

Aerial Roots ZmSBT3 Diazotroph CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA MAIZE ADVENTITIOUS ROOTS MUCILAGES NITROGEN FIXATION GENOME-WIDE ASSOCIATION STUDIES GENE CLONING NITROGEN FIXING BACTERIA

Transcriptome mining provides insights into cell wall metabolism and fiber lignification in Agave tequilana Weber

Luis Fernando Maceda Lopez ELSA BEATRIZ GONGORA CASTILLO Enrique Ibarra-Laclette DALIA C. MORAN VELAZQUEZ AMARANTA GIRON RAMIREZ Matthieu Bourdon José Luis Villalpando Aguilar Gabriela Chavez-Calvillo Toomer John Tang Parastoo Azadi Jorge Manuel Santamaría Fernández Itzel López-Rosas Mercedes G Lopez June Simpson FULGENCIO ALATORRE COBOS (2022, [Artículo])

Resilience of growing in arid and semiarid regions and a high capacity of accumulating sugar-rich biomass with low lignin percentages have placed Agave species as an emerging bioen-ergy crop. Although transcriptome sequencing of fiber-producing agave species has been explored, molecular bases that control wall cell biogenesis and metabolism in agave species are still poorly understood. Here, through RNAseq data mining, we reconstructed the cellulose biosynthesis pathway and the phenylpropanoid route producing lignin monomers in A. tequilana, and evaluated their expression patterns in silico and experimentally. Most of the orthologs retrieved showed differential expression levels when they were analyzed in different tissues with contrasting cellulose and lignin accumulation. Phylogenetic and structural motif analyses of putative CESA and CAD proteins allowed to identify those potentially involved with secondary cell wall formation. RT-qPCR assays revealed enhanced expression levels of AtqCAD5 and AtqCESA7 in parenchyma cells associated with extraxylary fibers, suggesting a mechanism of formation of sclerenchyma fibers in Agave similar to that reported for xylem cells in model eudicots. Overall, our results provide a framework for un-derstanding molecular bases underlying cell wall biogenesis in Agave species studying mechanisms involving in leaf fiber development in monocots. © 2022 by the authors. Licensee MDPI, Basel, Switzerland.

AGAVE CELL WALLS LIGNOCELLULOSE CAD PROTEIN CESA PROTEIN SCLERENCHYMA BIOLOGÍA Y QUÍMICA CIENCIAS DE LA VIDA GENÉTICA GENÉTICA MOLECULAR DE PLANTAS GENÉTICA MOLECULAR DE PLANTAS

Association of specific expansins with growth in maize leaves is maintained under environmental, genetic, and developmental sources of variation

Francois Tardieu (2007, [Artículo])

Environmental Stimuli Expansins CIENCIAS AGROPECUARIAS Y BIOTECNOLOGÍA CELLS CROPS GENETIC ENGINEERING PROTEINS TISSUE EPIDERMIS ZEA MAYS